Burkholderia seminalis: WJ12_11415
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Entry
WJ12_11415 CDS
T04851
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bsem
Burkholderia seminalis
Pathway
bsem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJ12_11415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsem03019
]
WJ12_11415
03016 Transfer RNA biogenesis [BR:
bsem03016
]
WJ12_11415
Enzymes [BR:
bsem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
WJ12_11415
Messenger RNA biogenesis [BR:
bsem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WJ12_11415
Transfer RNA biogenesis [BR:
bsem03016
]
Prokaryotic type
tRNA degradation factors
WJ12_11415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
UPF0181
Motif
Other DBs
NCBI-ProteinID:
AOJ26381
LinkDB
All DBs
Position
1:complement(2525280..2527427)
Genome browser
AA seq
715 aa
AA seq
DB search
MSMFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFP
LTVDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVL
SVNPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLV
VAGTERAVLMVESEADQLSEEVMLGAVVFGHEQMQVAIDAIHELVREGGKPEWDWQPAPK
NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYSATSAKLEEEALAAGTAAADKATV
GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK
CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE
IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAAAAQSDTPPQQ
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcaacaaggtcgtgaaggaattccagtggggccagcacaaggtgcgcctc
gaaaccggtgaagtcgctcgccaggcgagcggtgcggtgatcgtcgacgtcgaagacacc
gtcgtgctggcaaccgtcgtcggcgcgaagtcggcgaagccgggccaggatttcttcccg
ctgaccgtcgattacctcgagaagacctactcggccggcaagatcccgggcggcttcttc
cgccgcgaaggccgtccgtcggagcatgagacgttgacgtcgcgcctgatcgaccgcccg
ctgcgcccgctgttcccggaaggcttctacaacgaagtccaggtcgtgatccacgtgctg
tccgtgaacccggaaatcccggcggacatccccgcgctgatcggcgcatcggccgcgctc
gccgtgtcgggcctgccgttcaacggcccggtcggtgccgcacgcgtggcgtacatcgac
aatgcgtacgtgctgaacccgacgcgtgaccagatcaaggcatcgagcctcgacctcgtc
gtcgcgggtaccgagcgcgccgtgctgatggtcgaatcggaagccgaccagctgtcggaa
gaagtgatgctgggcgcggtcgtgttcggtcacgagcagatgcaggtcgcgatcgacgcg
atccacgaactggtgcgcgaaggcggcaagcccgagtgggactggcagccggcgccgaag
aacgaggcgctgatcgcccgcgtgaccgaactggcgcagaacgacctgctcgccgcctac
cagctccgcgacaagcaagcgcgttcggcgaagctgaaggaagtctactcggccacctcg
gcgaagctcgaggaagaagcgctggcggccggtacggctgcggccgacaaggccaccgtc
ggcaacgtgctgttcgacatcgaggcaaagatcgtccgttcgcagatcctgaacggcgag
ccgcgtatcgacggccgcgacacgcgcaccgtgcgcccgatcgaaatccgcaccggcgtg
ctgccgcgcacccacggctccgcgctgttcacccgcggcgagacgcaggcgctggtcgtc
gcgacgctcggcacgaagggtgacgagcagatcatcgacgcgctcgaaggcgaataccgc
gagcgcttcatgctccactacaacatgcccccgttcgccaccggcgaaacgggccgcgtc
ggctcgccgaagcgccgcgaaatcggccacggccgcctcgcgaagcgcgcgctggtcaag
tgcctgccgagcgccgacgaattcggctactcgatccgcgtcgtgtcggaaatcaccgag
tcgaacggttcgtcgtcgatggcgtcggtgtgcggcggctgcctcgcgctgatggacgcc
ggcgtgccgatgaaggcgcacgtcgcgggtatcgcgatgggcctgatcctcgaaggcaac
aagttcgcggtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttc
aaggtggccggcacggaacaaggcgtgacggcgctgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgcgctcgcgcaggcgaaggaaggccgcatgcacatc
ctcggcaagatgacctcggcggtctcgggggcgaacacgcagctgtcggaattcgcgccg
cgcatgatcacgatcaagatcaacccggaaaagatccgcgacgtgatcggcaagggcggt
tcggtgatccgcgcgctgacggaagaaacgggcacgaccatcgacatctcggatgacggc
gtcgtgacgatcgcgagcaccagcagcgaaggcatggccgaagcgaagaagcgcatcgag
caaatcacggccgagatcgaagtcggccaggtgtacgaaggcacggtgctcaagctgctc
gatttcggcgcgatcgtgaacctgctgccgggcaaggacggcctgctgcacatctcggaa
atcgtcaacgagcgtgtgaaggacatcaacgactacctgaaggaaggtcagcaggtcaag
gtcaaggtcattcagacggacgagaagggccgtgtgcgcctgtcggccaaggcgctgctg
aacgaagccgctgcggcagcgcagtcggatacgccgccgcagcagtaa
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