Burkholderia seminalis: WJ12_13400
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Entry
WJ12_13400 CDS
T04851
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bsem
Burkholderia seminalis
Pathway
bsem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJ12_13400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsem03019
]
WJ12_13400
Enzymes [BR:
bsem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WJ12_13400
Messenger RNA biogenesis [BR:
bsem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WJ12_13400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Sacchrp_dh_NADP
Cas3-like_C_2
DegT_DnrJ_EryC1
SNF2-rel_dom
CARD_2
CMS1
Ric8
Motif
Other DBs
NCBI-ProteinID:
AOJ25762
LinkDB
All DBs
Position
1:2958375..2959826
Genome browser
AA seq
483 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
ERQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQPRAGGNGGGGGGGNRQPRAGGSGQP
AAKRDGNAQPKASQQKAAKPRTQGAAGGTGGRPAGGGNSARPANGNAAHPNRNRSSRSGQ
RGH
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcttggccgaaccgctggtcaaggcggtcaacgagctcggc
tacacatcgccgaccccgatccagcagcaggcgatccctgccgtcctcggcggcggcgac
ctgctcgccggcgcgcaaacgggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcatacgttctacgcggacaatcgcggggcgaagcgcgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcgcaggtcgaggaaagcgtccgtgcgtacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccgcctgctcgaccac
atgcagcagaagaccatcgacctgtcggatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
gagcgccagaacctgctgttctccgctaccttctccgacgaaatcaaggcgctcgcggac
aacctgctcgattcgcccgcgctgatcgaggtcgcacgccgcaacacgacggccgaaagc
gtcgcgcagaagatccacccggtcgaccgcgatcgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtactcgtgttcacgcgcaccaagcacggcgcgaac
cggctcgccgagcagttgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgcacgcgcgcgctggccgagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgatatcgccgcgcgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgcccgaggattacgtgcaccggatcggccgcacgggccgcgcg
ggcgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcgggcttcgaacccgat
ccgaacgcgaagccggagccgatccagcagcgtcgcgggcaacagccgcgcgctggtggt
aatggcggcggcggtggcggcggcaatcgccagccgcgggcgggcggctcaggccagccg
gccgcgaaacgcgacggcaacgcgcaaccgaaagcctcgcagcagaaggccgcgaagccg
cgcacgcaaggcgccgccggcggtaccggcggacgtccggcgggcggcggcaacagcgcc
cgcccggcgaacggcaacgccgcgcacccgaaccgcaatcgttcgtcgcgcagcggccag
cgcggtcactga
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