Burkholderia seminalis: WJ12_14055
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Entry
WJ12_14055 CDS
T04851
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bsem
Burkholderia seminalis
Pathway
bsem03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bsem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
WJ12_14055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsem03400
]
WJ12_14055
Enzymes [BR:
bsem01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
WJ12_14055
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
WJ12_14055
DNA repair and recombination proteins [BR:
bsem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
WJ12_14055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
C1_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AOJ25883
LinkDB
All DBs
Position
1:complement(3110845..3111672)
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AA seq
275 aa
AA seq
DB search
MPELPEVEVTRRGIEPFVAGRRVERVDVRTEMLRWPVPAGLAEQLRAREVLAVERRGKYL
LFEVDAGWFIVHLGMTGTLRVLPAAGVPVAAKHDHIDWIFDEFVLRFRDPRRFGAVLWHP
REAGDVHAHPLLASLGVEPFSPAFTGALLHARTRGRTVSVKQALLAGDMVVGVGNIYASE
SLFRAGIRPTTAAGKVSLPRYERLADAVRATLADAIERGGSTLRDFVGSNGESGYFQLDC
FVYDRAGQPCRVCGTPIRQIVQGQRSTYFCPTCQR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccagagttgccagaagtcgaagtcacgcgccggggcatcgagccctttgtcgcgggc
cgccgcgtcgagcgtgtcgacgtccgtaccgagatgctgcgctggcccgtgccggcgggg
ctcgccgagcagttgcgcgcgcgcgaggtgctcgccgtcgagcgtcgcggcaagtatctg
ctgttcgaggtcgacgccggctggttcatcgtccatctcggcatgacgggcacgctgcgc
gtgctgcccgcggccggcgtgccggtcgccgcgaagcacgaccatatcgactggatcttc
gacgaattcgtgctgcggttccgcgacccgcgccgcttcggcgccgtgttgtggcacccg
cgcgaagcaggcgacgtgcacgcgcatccgcttctcgcgagcctcggcgtcgagccgttc
tcgccggcgttcaccggcgcgctgctgcacgcgcgcacgcgcggccgcacggtgtcggtc
aagcaggcgctgctcgcgggcgacatggtcgtcggcgttggcaacatctatgcgtcggag
agcctgtttcgcgccggcatccggccgacgacggccgccggcaaggtctcgctgccgcgc
tacgagcggctggccgacgcggtgcgcgcgacgctcgccgacgcgatcgagcgcggcggc
agcacgttgcgcgattttgtcggcagcaacggcgaaagcggctacttccagctcgactgc
ttcgtctacgaccgggcgggccagccgtgccgcgtatgcggcacgccgatccgccagatc
gtgcagggccagcggtcgacctatttctgtccgacctgccagcgttga
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