KEGG   Burkholderia seminalis: WJ12_24725
Entry
WJ12_24725        CDS       T04851                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
bsem  Burkholderia seminalis
Pathway
bsem03030  DNA replication
bsem03410  Base excision repair
bsem03420  Nucleotide excision repair
bsem03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bsem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    WJ12_24725
   03410 Base excision repair
    WJ12_24725
   03420 Nucleotide excision repair
    WJ12_24725
   03440 Homologous recombination
    WJ12_24725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bsem03032]
    WJ12_24725
   03400 DNA repair and recombination proteins [BR:bsem03400]
    WJ12_24725
Enzymes [BR:bsem01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     WJ12_24725
DNA replication proteins [BR:bsem03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     WJ12_24725
DNA repair and recombination proteins [BR:bsem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     WJ12_24725
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     WJ12_24725
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 NYN_YacP
Other DBs
NCBI-ProteinID: AOJ28105
LinkDB
Position
2:866268..869021
AA seq 917 aa
MPEERNLEGKTLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEY
SACVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDV
IGTLAREAERHGMNVIVSTGDKDLAQLVTDRVTLVNTMTNETLDRDGVIAKFGVPPERII
DYLALIGDTVDNVPGVEKCGPKTAVKWLAQYDSLDGVIEHAGEIKGVVGDNLRRALDFLP
LGRKLVTVETACDLAPHLESIEASLKSDGEARDMMRDIFARYGFKTWLREVDSAPAEGGG
ADAPEGEPAPVVAADIVREYDTIQTWEQFDAWFAKINDAKLTAFDTETTALDPMLARLVG
LSFSVEPGKAAYLPVAHRGPDMPEQLPIDEVLARLKPWLESADRKKVGQHLKYDAQVLAN
YDIELNGIEHDTLLESYVVESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVAL
AQAAEYAAEDADITLQLHHVLYPQVAREPGLERVYREIEMPVSRVLRKMERTGVLIDDAR
LHAQSTEIATRLIELEAQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDE
EVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRLAS
NDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGE
DIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRY
FTRYPGVAQYMEDTRSLAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGT
AADLIKLSMIAVDDWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVAKLK
VPLVAEVGAGANWEEAH
NT seq 2754 nt   +upstreamnt  +downstreamnt
atgcctgaagaacgaaatctggaaggtaagaccctgctattggttgacggttcgagctat
ctgtatcgggcttaccatgcgatgcctgatttgcgtggccctggcggggagccgaccgga
gcgctctacggaatcatcaacatgctgcgccgtatgcgcaaggaagtcagtgcagagtat
agcgcttgcgtgttcgatgcaaagggcaagacgttccgtgacgacctttatgccgactat
aaggcaaaccgtccgtcgatgccgcccgatcttgcattgcaggtcgagccgatccacggc
gcggtgcgcgcgctcggctggccgctgctgatggtcgaaggcgtcgaggccgacgacgtg
atcggcacgctcgcgcgcgaagccgagcggcacgggatgaacgtgatcgtgtcgaccggc
gacaaggatctcgcgcagctcgtgaccgaccgcgtcacgctcgtcaacacgatgaccaac
gaaacgctcgaccgcgacggcgtgatcgcgaagttcggcgtgccgcccgagcgcatcatc
gactacctcgcgctgatcggcgataccgtcgacaacgtgcccggcgtcgagaagtgcggg
ccgaagacggccgtgaaatggctcgcgcaatacgacagcctcgacggcgtcatcgagcac
gcgggcgagatcaagggcgtggtcggcgacaacctgcgccgcgcgctcgatttcttgccg
ctcggccgcaagctcgtgaccgtcgagacggcctgcgatctcgcgccgcatctcgagtcg
atcgaagcgtcgctgaagagcgacggcgaagcgcgcgacatgatgcgcgacatcttcgcg
cgctacggcttcaagacctggctgcgcgaagtcgacagcgcgccggcggaaggcggcggc
gccgatgcgccggaaggcgagccggcaccggtggtggcggccgacatcgtgcgcgaatac
gacacgatccagacctgggagcagttcgacgcctggttcgcgaagatcaacgacgcgaag
ctgaccgcgttcgacaccgagacgaccgcgctcgacccgatgctcgcgcgcctcgtcggc
ctgtcgttctcggtcgagccgggcaaggccgcgtacctgccggtcgcgcaccgcggcccc
gacatgcccgagcaactgccgatcgacgaggtgctcgcgcgcctgaagccgtggctcgaa
tcggccgaccgcaagaaggtcggccagcacctgaagtacgacgcgcaggtgctcgcgaac
tacgacatcgaactgaacggcatcgagcacgacacgctgctcgaatcgtacgtcgtcgaa
tcgcaccgcacgcacgacatggacagcctcgcgctgcgtcatctgggcgtcaagacgatc
aagtacgaagacgtcgcgggcaagggggcgaagcagatcggcttcgacgaagtggcgctt
gcgcaagccgccgaatacgcggccgaagatgcggacatcacgctgcagcttcatcacgtg
ctgtatccgcaggtcgcgcgcgagccgggcctcgagcgcgtgtatcgcgagatcgagatg
ccggtctcgcgcgtgctgcgcaagatggagcgcacgggcgtgctgatcgacgatgcgcgg
ctgcacgcgcagagcactgaaatcgcgacgcgcctgatcgagctcgaagcgcaggcgtac
gagctggcgggcggcgaattcaatctcggctcgccgaagcagatcgggcagatcttcttc
gagaagctgcagttgcccgtcgtgaagaagacgccgagcggtgcgccgtcgaccgacgaa
gaggtgctgcagaagctcgcggaggactacccgctgccgaagctgctgctcgagcatcgc
gggctgtcgaagctgaagtcgacctataccgacaagctgccgcgcatggtgaacccttcg
acggggcgcgtgcacacgaactatgcgcaggccgtcgcggtgacgggccgcctcgcatcg
aacgacccgaatcttcagaacattccggtgcgcacggccgaaggccggcgcatccgcgag
gcgttcatcgcgtcgccgggtcaccggatcgtgtcggccgactattcgcagatcgaactg
cggatcatggcgcatatctccggcgacgcgtcgctgctgcgcgcgttctcgcagggcgag
gacatccaccgcgcgacggccgccgaggtgttcggcgtgacgccgctggaggtcaattcc
gaccagcgccggatcgcgaaggtgatcaacttcgggctcatctacgggatgagcgcgttc
ggcctcgcgtcgaacctcggcatcacgcgtgacgcggcgaagctctatatcgaccgttat
ttcacccgctacccgggcgtcgcgcagtacatggaggacacgcgctcgctggcgaaggaa
aagggctacgtcgaaaccgttttcggccgccgcctgtggctgccggaaatcaacggcggc
aacggcccgcgccgccaggcggccgagcgcgcggccatcaacgcgccgatgcagggcacg
gccgccgacctgatcaagctgtcgatgatcgcggtggacgattggctcacgcgcgacaag
ctcgcgtcgcgcatgatcatgcaggtgcacgatgaactggtgctcgaggtgcccgacgac
gagctgtcgctggtgcgcgagaaactgccggaaatgatgtgcggcgtcgcgaagctgaag
gtgccgctcgtcgccgaggtcggtgccggcgcgaactgggaagaggcacactga

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