Burkholderia seminalis: WJ12_33930
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Entry
WJ12_33930 CDS
T04851
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bsem
Burkholderia seminalis
Pathway
bsem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJ12_33930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsem03019
]
WJ12_33930
Enzymes [BR:
bsem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WJ12_33930
Messenger RNA biogenesis [BR:
bsem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WJ12_33930
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOJ29745
UniProt:
A0A8A8DAF7
LinkDB
All DBs
Position
2:complement(3013566..3014990)
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AA seq
474 aa
AA seq
DB search
MSFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPAVLNGKDVMAAAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPTRR
QTLLFSATFTDDIRAMAAGILRNPVDISVSPPNVTASKIKQWVVTVDKRNKPDLFMHLVA
ENNWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAREVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEEPGFEAEHRVPETSATGQIIKKPKKPKKPKVQHAAPVAKPAPGKKPRSP
GGEGQRKPAAQHARPADSGPDYTIGSPFSVKKPRGKPGSKPAGKPAGGRGKPSR
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgcttggcctgatcgagccgctgctgcgtaacctgcagggcctcaat
taccagacacctacgccggtgcaggccaaggcgattcctgcggtgctgaacggaaaggac
gtcatggccgcggcacaaaccggcaccggcaagacggcagggtttgcgctgccgctgttg
caacggctcgtgcaacacggcccggcggtatccagcaaccgcgcgcgcgtgctggtgctg
gtgcccacgcgcgaactggccgaacaggtgctgcaaagcttcgtcgagtacggcaagggc
ctcgatctgcgtttcctggccgcctacggcggcgtgagcatcaacccgcagatgatgaag
ttgcgcaagggcgtggacgtgctcgttgccacgccgggccgcctgctcgacctcaatcgc
cagaacgcggtgcagttcgatcaggtgcagacgctggtgctggatgaagccgatcgcatg
ctggatctcggctttgcgcgcgagctcaatgccgtcttcgccgcgttgccgacgcggcgc
cagacactgctgttctccgccacgtttaccgacgatatccgcgcgatggcggcgggcatc
ctgcgcaatccggtcgatatcagcgtcagcccgcccaacgtcacggccagcaagatcaag
cagtgggtggtgacggtcgacaagcggaacaagcccgatctgttcatgcacctggtggcc
gagaacaactgggagcacgcgctggtattcgtcaagacccgcaatggcgtcgactatctg
gcggccatgctggatgaagccggctatgcggtcgacaccatccacggcgacaagccgcaa
cccgcgcgcctgcgggcgctggagcgcttcaaggcacgcgaagtacagatgctggtcgcc
accgatgtggcggcgcgcgggctggatatcgacgatctgccgctggtgatcaacgtcgat
ctgccgatcgtcgcgcaggactacgtgcaccgcatcggccggaccggccgcgcgggtgcc
agcggggtggccgtgtcgctcgtgtgtgccgatgaagcgccgcaactggccgcgatcgaa
gcgttgatccggcaaacgctgcggcgcgaggaagagccgggtttcgaagccgaacaccgc
gtgccggagacgagcgcgacggggcagatcatcaagaaacctaaaaaaccgaagaagccc
aaggtgcagcacgccgcgccggttgccaagccggcgcccggcaagaagccgcgatcgccg
ggcggcgaagggcagcgcaagcctgcggcgcagcatgcgaggccggccgacagcgggccg
gactacaccatcggcagtccgttcagtgtgaaaaagccgcgcggcaaacctggcagcaag
ccagcgggcaagcctgccggcggccggggcaaaccgtccaggtaa
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