Brasilonema sennae: DP114_01970
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Entry
DP114_01970 CDS
T10102
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bsen Brasilonema sennae
Pathway
bsen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DP114_01970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsen03019
]
DP114_01970
03009 Ribosome biogenesis [BR:
bsen03009
]
DP114_01970
Enzymes [BR:
bsen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DP114_01970
Messenger RNA biogenesis [BR:
bsen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DP114_01970
Ribosome biogenesis [BR:
bsen03009
]
Prokaryotic type
rRNA helicases
DP114_01970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QDL06832
UniProt:
A0A856M7X1
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All DBs
Position
473615..475159
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AA seq
514 aa
AA seq
DB search
MNLSFSDLGISQESVQQLEKLGFSAPTNIQAQAIPHLLSGRDVVGQSQTGTGKTAAFSLP
IIDQVDVTQKAVQALVLTPTRELAIQVHDAINQFIANQDLRVLAIYGGQSIDRQMLQLKR
GVHMVVGTPGRVIDLLDRGSLKLDRVKWFVLDEADEMLSMGFIDDVEKILSQAPKERQTA
LFSATMPPSIRQLVNKFLHSPVTVTVEQPKAAPNKINQVAYVVPRHWTKAKALQPILEME
DPESALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLIRFRNRQVRWVVATD
IAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQVFERH
NRQTWQVLSIPTRTQIEARQIEKLQTQVREALAGERLASFLPMVSELIEQYDAQAIAAAA
LQIAYDQTRPAWLQSEPDITEEDLVPPTPKPRLRTGRRGDLSSDRPRSSWSSSDTNNTEG
EKRGSPKPKLRTGRRETSVSPKKLGSGAARETAS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgttttcagatttaggaatttcacaagagtctgttcagcaattagaaaaa
ctaggctttagcgcaccaacaaacatccaagcgcaagcaatcccacacctgttatcaggt
cgtgatgttgtaggtcaatcccaaactggaacaggaaaaacagcagcattttcactgcca
attatagatcaggtggatgtgactcaaaaagctgtccaagctttggttctaacaccaact
cgtgagttagctattcaagttcacgatgcgatcaatcaatttattgcaaaccaagatttg
cgggttttagcaatctacggtggtcaatcgatagatcgtcaaatgttacaactcaaacgc
ggcgttcatatggtagtaggtacgccagggcgagtgatagacttgcttgatcgaggcagt
ttgaagctggatcgggtgaaatggtttgtgttggatgaagctgatgaaatgctaagcatg
ggctttatcgacgatgtggagaaaattctctctcaagctcccaaagagcgtcagacagct
ctattctcggcaacaatgcctccctcaattcgtcaattagtcaacaagttcttacattcg
cccgtcacagtaaccgttgagcaaccaaaagccgctcctaacaaaattaatcaggtagct
tatgttgtaccgcgccactggacaaaagcaaaagcattacagcccattcttgaaatggaa
gatccagaatcggctttaatctttgttcgtactagacgcacagcagcagaactcaccagt
caactgcaagcagctggtcatagtgtggatgaatatcacggtgatttgtcgcagcaagca
cgggaacggttattgatacggttccgcaatcgtcaagtaaggtgggtcgttgcaacggat
attgcagcacgaggtttagacgttgaccagttgtctcacgtgattaactttgacttaccc
gatagcgtagaaacctatgttcaccggattggtcgtacaggtcgagctggtaaagaaggt
acagccatttctctggtgcagccctttgaacgacgcaagcagcaagtgtttgaacgccat
aatcggcagacttggcaagtgctgtcgattcctacacggacacaaattgaagcgcggcag
atagaaaaattgcaaactcaagtgcgagaagcattggcaggtgagcgtttagcttcattt
ttaccaatggtaagcgagctgattgaacaatacgatgctcaggcgatcgctgcagcagcg
ttgcaaattgcttacgaccaaacccgtcctgcttggctgcaatcagaaccagacattaca
gaagaagatcttgtacccccaactcccaaacccagactgcggacaggacgtcgcggcgat
ttgtcttctgatcgcccccgctcctcttggtcttcatccgacaccaacaacacagaagga
gaaaaacgtggcagtcccaagcccaaactgcggacaggacgtcgtgagacctcagtttct
cccaaaaagctaggttccggtgcagctagggaaactgcttcttaa
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