Brasilonema sennae: DP114_07085
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Entry
DP114_07085 CDS
T10102
Symbol
rpoC2
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bsen Brasilonema sennae
Pathway
bsen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bsen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DP114_07085 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsen03021
]
DP114_07085 (rpoC2)
03400 DNA repair and recombination proteins [BR:
bsen03400
]
DP114_07085 (rpoC2)
Enzymes [BR:
bsen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DP114_07085 (rpoC2)
Transcription machinery [BR:
bsen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DP114_07085 (rpoC2)
DNA repair and recombination proteins [BR:
bsen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DP114_07085 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QDL07694
UniProt:
A0A856MBE9
LinkDB
All DBs
Position
1651695..1655780
Genome browser
AA seq
1361 aa
AA seq
DB search
MTNDKMVFRNRIVDKGQLKNLISWSFIHYGTARTAMMADKLKDLGFRYATKAGVSISVDD
LMVPPSKRSLLEAAEAEIRATEERYQRGEITEVERFQKVIDTWNGTSEALKDEVVNYFKK
NNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDQPIKTNFREGLTVTEYIIS
SYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREFDCGTTRGIPLRAMTEGEKVLINL
GTRLMGRVIGEDVVHPKTKEVIAARNSPVSDELARKIDKAGVKEVVVRSPLTCEAARSVC
QHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFSGEVAKQVRAESAG
TVRLPRKLRTRAYRTRHGEDALYVEANGNITLEVVTDNAGSPTPQDIAVTQGSTLYVVDG
QKIKTGQLVAEVAIGGRTTRINTEKAVKDVASDMAGEVKFADVVPEQKTDRQGNTTTTAA
RGGLIWILSGEVYNLPPGAELVVNNGDTIESNGVLAETKLTTLHGGVVRLPEATPGKGTR
EIEIITASVVLDQATVTAQTAQGRNNYLVTTGNNQVFNLRATPGTKVQNGQVVAELIDDR
YRTTTGGLLKYAGVDVQKKGKAKLGYEVVQGGTLLWIPEETHEVNKDISLLMVEDGQFVE
AGTEVVKDIFCQNSGVIEVTQKNDILREVVVKPGELLMVDDPEAVMGKDGTFIQPGEELL
GQVATELRYIEYVESPEGPGLLSRPVVEFAVPNNPDVPSTTSVSQQTSRSIQLRAVQRLP
YKDSERVKTVEGVELLRTQLVLEIEQEGEQDHNASPLAADIELVADVEDPEIQRLQLVIL
ESLVLRRDIAADVTQGSTQTSLEVEDGQTIVPSSVVARTQILCKEGGIVRGVQKGTEAVR
RCLVLRHTDMTTTNLSSPPKVKVGELVVEGVEIAPGVFAEQSGQVLALQKGERKAQKAQG
EIPPTEESALTTVNYSVTLRVGRPYRVSGGAVLQVDDGDLVQRGDNLVLLVFERAKTGDI
IQGLPRIEELLEARKPKEACILARRTGELKVVYGDGDEAIALKVVESNGVVTDYPLGPGQ
NLIMPDGSPITAGQALTDGPSNPHEILDIFFSLGSEDGIYACASHALQKVQTFLVNEVQS
VYQSQGIDIADKHIEVIVRQMTSKVRIDDGGDTSMLPGELVELRQVEQVNEAMAITGGAR
AQYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPA
GTGFNAYEEPGAIEDYAADMTTTVLDEVDDPLDMVLDDRTARSYQLDSPTVNGDGFGLRR
SPEKSILDEDDLMLPSDSETDLDDFAEEDYDEDDDYDDDDE
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgactaatgacaaaatggtttttcggaatcgcatcgttgacaaaggtcaactgaagaac
cttatctcctggtcgttcatccattatggtacggcccggacagcaatgatggcagacaaa
ttaaaagatttgggattccgctacgcgaccaaagcaggtgtttccatcagtgttgatgat
ttgatggttcctccttccaagcgatcgcttctagaagccgccgaagctgaaattcgtgca
acagaagaacgctaccaacgtggagaaattaccgaagtagagcgattccaaaaagtgatt
gacacttggaacggtacttctgaagccctcaaagacgaagtggtcaactacttcaagaaa
aataacccccttaactccgtgtacatgatggcattctctggagcaaggggtaacatttct
caggtgcgccaattggtcggaatgcgaggactaatggcggatccccaaggagaaattatt
gaccagccgatcaaaacaaacttccgcgaaggactgaccgtaacagaatacattatttcg
tcttacggtgcgagaaaaggtctagtagacacagccttgcggactgctgactctggttat
cttacccgccgtttggtggacgtatcgcaggatgtgattattcgagaatttgactgcggt
accaccaggggaattcctttgcgagctatgacagaaggtgagaaagtcttgattaacctt
ggcacaaggttaatgggacgagtcattggagaggatgtcgtgcatccaaaaacaaaagaa
gttattgcagcacgtaatagccccgtttccgatgaactggcacgcaaaattgataaggcc
ggagtcaaagaagtcgtcgtgcgttctcctttgacttgtgaagcagcgcgatccgtctgc
caacattgctatggctggagtttggcacacgctaagatggtggatcttggcgaagctgta
ggtattattgcggcacaaagtattggtgaacctggtacccagctgacaatgcgtaccttc
cacacaggtggtgtcttctctggtgaagtagcaaaacaagtccgtgcagaatccgctggt
accgttcgcttgccacgtaaattgcggacaagggcttaccgcacccgccacggggaagac
gccctgtatgtagaagccaatggcaacattactttagaagtagtaacagacaacgctggc
tcccccacgcctcaagacattgctgtgacccaaggttcaacactctacgttgttgatggg
caaaagattaaaacaggtcagctagtggctgaggttgcgatcggtggacgtacaactcgt
atcaatacagaaaaagcagtcaaagatgtcgcctctgacatggcaggggaagtcaaattt
gccgatgttgtgccagaacaaaaaactgaccgtcagggaaacaccacaacaacagcagca
cgggggggattgatttggattctctcaggggaagtttataacttacccccaggagcagag
ttggtggtcaacaatggtgacaccatagaatccaacggtgttctagcagaaaccaagtta
acaacgttacatggcggtgtggtccgcttacctgaagcaaccccaggtaaaggaacacgg
gaaattgaaattatcactgcttctgtggttttagaccaagcaacagtaacagcgcaaacc
gctcaaggtcgcaacaactacttagtcaccactggaaacaaccaagtctttaacctgaga
gcaaccccaggcacaaaagttcaaaatggtcaagtggtagctgagttgattgatgaccgc
tatcgcacaaccactggtggattgctgaaatacgctggtgtggatgtccagaaaaaaggt
aaggcaaagctgggttacgaggtagtgcagggaggtaccctcctctggattcctgaagaa
acccacgaagtgaataaagatatttcgctgctaatggtagaagacggtcagtttgttgaa
gctggcaccgaagtcgtgaaagatatcttctgccaaaacagtggtgtgatcgaagtcact
cagaaaaacgacattctccgggaagtggttgttaagccaggagaactgttgatggtggac
gacccagaagcagtgatgggcaaagatggcacctttattcagcccggtgaagaattatta
gggcaagtcgcgacagagttgcgctacatcgaatatgtggaatcaccagaaggtccagga
ctgttaagtcgtccagttgttgagtttgcagtacccaacaatcctgatgtgccatcaacc
acatcagtcagtcaacaaacaagtcgttcaattcaattgcgggcagtacagcgtctgcca
tacaaagattctgagcgtgtcaagaccgtcgaaggtgttgaactgctgcgaacccaactg
gtgttggaaattgagcaggaaggcgaacaagaccacaatgcttcccccttggcagcagat
attgaattagtagcggatgttgaggatccagaaattcagcgcttgcaactagtcattttg
gaatctttggtgcttcgtcgggatatagctgctgacgtaacccaaggcagtactcagaca
agcctggaagtagaggatggacaaacaatagtcccaagttctgtcgtcgcacgtacccaa
atattgtgtaaagaagggggtattgtgcggggggtgcaaaagggaacagaggcggttcgc
cgctgtttagtgttgcgccacactgacatgactacgactaatttgagctccccacccaaa
gtcaaagtcggtgagttggtagtagaaggtgtagaaattgctcctggagtctttgccgag
caatctgggcaagtcctggcactacagaaaggagaaagaaaagcccagaaggcacaagga
gaaataccccctactgaggaatcagcactcactactgtgaactactccgttacactccgt
gttggtcgtccgtaccgagtcagtggaggcgctgtgttgcaggtagacgatggcgaccta
gtacaacgtggtgataacttagtgttgttggtgtttgaacgcgccaagactggggacatc
attcaaggtttgcccagaattgaggaactccttgaagcccgtaagccaaaagaggcgtgt
atactagcacgtcgtactggagaactcaaggtcgtttacggcgatggcgatgaagcgatc
gcgctgaaagttgttgaatccaatggtgtggtcaccgattatcctctaggacccggacaa
aacttgatcatgccagatggatcaccaatcacagccggacaagcattaactgatggtcct
tctaatccccatgaaattttggacatcttcttcagcctgggttctgaagacggaatttat
gcctgcgccagccatgccttgcaaaaggtgcaaacgttcttggtgaacgaagtgcaatca
gtgtatcagtcccaaggtattgatattgcggacaagcacattgaagttattgtccgccag
atgacctcgaaagtacggatagatgatggtggtgacaccagcatgctgcctggagaattg
gtagagttgcgccaagtcgagcaagtcaatgaagcgatggcaatcactggtggtgcacga
gcgcagtataccccagtattattaggtattaccaaagcatcgttgaataccgatagcttt
atttccgcagcatccttccaagaaacaacgcgtgtcttgactgaggcggcaattgaaggt
aagtctgattggttgcgcggcttaaaggaaaacgtgattatcggacgactgattcctgca
ggtactgggtttaacgcttatgaagaacctggtgcgatcgaggactatgctgctgatatg
actaccactgtcttggatgaagttgacgatccactcgatatggtcttggatgaccgcaca
gcccgaagctatcaattagattctcccactgttaacggggatggttttggtctcagacgc
agtccagaaaaatccatattggatgaggatgatttgatgcttccttctgatagcgaaact
gaccttgatgacttcgcagaagaagactacgatgaagacgacgattacgatgatgacgac
gagtag
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