Brasilonema sennae: DP114_15855
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Entry
DP114_15855 CDS
T10102
Name
(GenBank) RNA polymerase subunit sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bsen Brasilonema sennae
Pathway
bsen02020
Two-component system
bsen02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bsen00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DP114_15855
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DP114_15855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsen03021
]
DP114_15855
Transcription machinery [BR:
bsen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DP114_15855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_3
HTH_32
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
QDL09176
UniProt:
A0A856MJQ3
LinkDB
All DBs
Position
complement(3679318..3680679)
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AA seq
453 aa
AA seq
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MSALISTPSVETHLETQAVLYPSLRYLVQLLPLDHRRVIKHVRNEVEQNPFLRSTTSSGN
KETLVSDVLPDWYTPPAAELSLQEHLQGQISALNLSSRQQKALLYLIEWLSPSGYLEESP
QVWAAGSGFSISELEGVIPDLQGLDPLGIGARSLQECLLLQLPNQPENLATLLVRDYLEE
IAACVSNSTEAQCHRDALLQKLRQTRSSLDSETLKSAIRQIQTLEPRPARNFSHSPAPIV
TPDLKAEPHAGGWQVMLAYEVSRDFYLDEEAVAVLNRPHRKTKETQRLEVLLQKARSLLT
ALNQWQDNLLKVGEFLVARQQAFLSSRDALDLVPTPQQMVAQAVGLSNATISRIVRERYL
LIGGQPSQIVPLQKLCTPARVGGHTPQQIQQFIQQLIQEESPAKPYSDDQLAQWIKLRFG
LPIARRTVTKYRKMAGVDSSSRRKMPVGQGIRV
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcactcatatccacaccttcggtagaaacccacttagagactcaagcagtcctt
tatccaagcttgcgctatcttgtgcagctgctgcccttggatcatcgacgggttattaag
catgttagaaatgaagttgaacaaaatccttttttgcgcagcacgacgagttctggcaat
aaagaaactctggtgtcagatgttttaccagattggtacactccaccagcggcagaactt
agtcttcaagaacatctgcaaggacaaatttcagcccttaacctatcttctcggcagcaa
aaagccttactttacttgattgaatggttatctccatctggctacttagaagaatcaccg
caagtttgggcggcgggtagtggattttctattagcgaactagaaggggtgattcctgat
ttgcaaggtttggatccgctggggattggtgcgcgatcgcttcaagaatgtctcttatta
caacttccaaatcaacccgaaaatttagcaacactattagtcagggattatttagaggag
atagcagcttgtgtcagcaattccactgaggcacaatgtcaccgagatgcgctactgcaa
aagctgcgacagacaagatctagtcttgattctgaaacactcaagagtgctattcgccag
attcaaacgctagaacctcgaccagccaggaactttagtcacagccccgcaccaattgtc
acccccgatttgaaagcagaacctcatgcaggcggttggcaagttatgttagcttacgag
gtgagtcgagatttctacctggatgaggaagctgttgctgttctcaaccgcccacatcgt
aaaaccaaagaaactcaacgactggaagttctgttgcagaaagctcgttctttactcact
gcattgaaccaatggcaagataatctcttgaaagtgggagagtttttggttgctcgtcag
caagcttttctttccagtcgagacgcgttggatcttgttcctacaccacaacaaatggtt
gctcaagcggtgggactctcaaatgcaactatcagtcggattgtgcgcgagcgatatctg
ttaattggtggacaaccaagccagattgtaccgttacaaaagctttgcacacctgctcgt
gttggtggacacaccccacaacaaatacagcagttcattcagcaactaattcaagaagaa
tctcctgcaaagccttatagtgatgaccaattggcacagtggattaagttgcggtttggt
ctacccatcgctcgcagaaccgtgaccaagtaccgcaaaatggcaggtgttgattcatct
agtcgtcgtaagatgcccgtagggcagggtataagggtgtaa
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