Bradyrhizobium septentrionale: HAP48_0012450
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Entry
HAP48_0012450 CDS
T07866
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bsep
Bradyrhizobium septentrionale
Pathway
bsep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HAP48_0012450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsep03019
]
HAP48_0012450
03009 Ribosome biogenesis [BR:
bsep03009
]
HAP48_0012450
Enzymes [BR:
bsep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HAP48_0012450
Messenger RNA biogenesis [BR:
bsep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HAP48_0012450
Ribosome biogenesis [BR:
bsep03009
]
Prokaryotic type
rRNA helicases
HAP48_0012450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DUF87
Motif
Other DBs
NCBI-ProteinID:
UGY18166
LinkDB
All DBs
Position
complement(2232810..2234765)
Genome browser
AA seq
651 aa
AA seq
DB search
MSFSTTSPPLARALAERSYDQPTPVQVAVLADEAVGRDLLVSAQTGSGKTVAYGLAIATD
LLDGAERFERAAAPLALIVAPTRELALQVHRELAWLYQYADGRVVSCVGGMDPRREQREL
AAGAHIVVGTPGRLCDHLRRGHLDTSELKAVVLDEADEMLNLGFREDMEFILEATPEARR
TLLFSATFPRGIVALAKQYQQQAFRIEVAGDEGGHADIDYRAIRIAAGDVEHAVVNVLRF
FDAPSALVFCNTREAVRHLQSALLERGFSVVALSGELTQNERTQALQALRDGRSRVCVAT
DVAARGIDLPSLDLVIHADLPNDAEVMQHRSGRTGRAGRKGVSVLLVPPARRRRAELLLN
LSGIDAVWGTAPQPDEIRKLDHERMLKDAVLTEESSPDDLVLAQALLAERSPEEIAAALA
RLYRARLPSPEDISDPGEGKGRSRDDRGRDDPRSSRGDDRPARARSKSGTSSSRHGMAEA
SVWFRAAIGRKKNAEARWLLPMICRRGGIDKRDIGAIRIMDTTTEFEISERVAESFAVKI
QRPDKEDSIRIEPLTGAPQGQAASDKRSHAPRREAVDADGGVRHGDEAREAAGPKHRGKP
YRDGGAKFGGEPARDKRKKHRDKSGHAGPPTGVTEWSTKASGKKGKKKRRG
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
gtgtcattttcgacaaccagcccgccgctcgcccgggccctcgccgagcgcagctacgat
cagccgacccccgttcaggtcgccgtgcttgccgacgaagccgtcggccgcgacctcttg
gtttcggcccagaccggctctggcaagaccgtcgcctacgggcttgcgatcgcaaccgat
ctgctggacggcgccgagcggttcgaacgggcggcggcgccgctggccctgatcgtcgcg
ccgacgcgcgagcttgctttgcaggtccaccgcgagctcgcatggctctatcaatatgcc
gatggacgcgtcgtctcctgcgttggcggcatggatccgcgccgcgagcagcgcgagctt
gccgccggcgcgcatatcgtcgttgggacgcccggccggctgtgcgaccacctgcgccgc
ggccacctcgacacctcggaattgaaggctgtcgtgctcgacgaagccgacgagatgctc
aatctcgggtttcgcgaggatatggagttcatcctcgaggccacgccggaggcgcggcgc
accttgctgttctcggcgacgttcccgcgcggcatcgtcgcgctggcgaagcagtatcag
cagcaggcgttccggatcgaggtcgcgggcgacgagggtggtcatgccgacatcgactac
cgcgcgatccggatcgctgcgggggatgtcgagcacgcggtcgtcaacgtgttgcgcttt
ttcgacgcgccgagcgcgctggtgttctgcaacacccgcgaagccgtcaggcatttgcag
tccgcgctgctggagcgcgggttctccgtggtcgcactgtcgggcgaattgacccagaac
gagcgcacccaggcgctgcaggcgttgcgcgacggccgctcccgcgtctgcgtggcgacc
gacgtggcggcgcgcggcatcgacctgccgagcctcgacctcgtgatccatgcggatctg
cccaatgacgcggaggtcatgcagcatcgctcgggccgcaccggccgtgccggccgcaag
ggcgtcagcgtcctgctggtgccgccggcgcgtcgacggcgtgcggaattgctgctcaat
ctgtccggcatcgatgcggtctggggcaccgcgccgcagccggatgagattcgcaagctc
gatcacgaacgcatgctgaaggatgcggtgctcaccgaggagtcgagccccgacgatctg
gtgctggcgcaggcattgctcgccgagcgctcgccggaggagatcgccgcggcgctggcg
cggctctatcgtgcgcggcttccgtcgcccgaggacatcagcgatcccggcgagggcaag
ggccgatcgcgcgacgatcgcggccgggacgatccgcgcagttcacgcggtgatgaccgg
cctgcgcgagcccgatcgaagagcggaacatcatcgtcgcgccacggcatggctgaagcc
agcgtctggttccgggcggcgatcggacgaaagaagaatgcggaagcgcgctggctgttg
ccgatgatctgccgtcgcggcggcatcgacaagcgcgacatcggcgccatcaggatcatg
gatacaacgaccgagttcgagatttcggagcgggtcgccgaatccttcgccgtcaagatc
cagcgtccggacaaggaagacagcatccgcatcgagccgctcaccggcgcgccgcagggg
caggcggcgtccgacaagcgatcacacgcgccccggcgcgaggcggtcgacgcggatggc
ggtgttcgtcatggtgacgaggcgcgcgaggcggccggaccaaaacaccgcggcaagcct
tatcgcgacggcggcgcgaagttcggcggcgagccggcgcgggataagagaaagaagcat
cgggacaagtccggacatgccggaccgccgactggggtgaccgaatggtcgacgaaggca
tccggaaagaagggaaagaaaaagcgccgcggctga
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