Bradyrhizobium septentrionale: HAP48_0036845
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Entry
HAP48_0036845 CDS
T07866
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bsep
Bradyrhizobium septentrionale
Pathway
bsep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HAP48_0036845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsep03019
]
HAP48_0036845
03009 Ribosome biogenesis [BR:
bsep03009
]
HAP48_0036845
Enzymes [BR:
bsep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HAP48_0036845
Messenger RNA biogenesis [BR:
bsep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HAP48_0036845
Ribosome biogenesis [BR:
bsep03009
]
Prokaryotic type
rRNA processing factors
HAP48_0036845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UGY14091
LinkDB
All DBs
Position
complement(7372646..7375867)
Genome browser
AA seq
1073 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEEHENRGHRRRSRHRNARR
RGHGERVQSEVIEGAGDAQAQPANEAHEHHADAEHHDHDTGHHDHGVIAHEDHEHDAHDH
AHHEEHEHHDHDHEHHHAHGHDDHDHDRHDHDHEHDHDHAPAVSEAPAADTQSDPVVAAV
EASAASAAPEVVETVEVNHEPDRAHQEQVEENAAHADDAPHIAADEVHATADEHAGAEYA
PLTDATASEARHGDEAGEDDDEDDGEEGEEEDVVESVGGDDVLEEVPERAFRPRRQYKIQ
EVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSR
LKEVVQDLDVPEGMGIILRTAGASRSKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEE
GSLIKRSLRDLYNKEIDEIQVAGEAGYREARDFMKMLMPANVRAVKQYRDGQPLFSRMGV
ESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRATREHHIEDTALKTNLEAAEEVA
RQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQR
IRASVLESSTEPCPQCGGSGHVRSVSSVALQLLRGIEEILMKGATHNLVVRTRTDVALYV
LNHKRGHLRDLEDSFRVSLSIVADATVHGQQSYIIDRGEQVHTLEAAKALLAAQAAAAPA
QADEVDDEEELLEYETETDETEGLADEQTAGEEASAAEGEGDGQRRKRRRRRRGRGGANE
AREGAPPPREDGDLMHVLPEGTEAVAAQDAEGDEDEGDEAQGAARDDQSASEAGNGDRRP
RRRGRRGGRRRRGSGPDDGLAGSIADELSPAAAPEAADAVADFDSHDAEPAPALAQPELF
AQPQEWQPTEAAPVEAAPVEAVAAPAPEAAAAAAEDAAAESDRAQRRRSTVREKVSFASS
PQPETPAHALAQSPAEEAAPEPAAVAQEAAPAATAEGPARKGWWSRRFGGGGN
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgccacccacccggaagagacccgggtcgtcgtggtc
cgtggcaatcgcgtcgaagagtttgatttcgagaccgctcagcgcaagcagctgcgcggc
aacatttacctcgccaaggtcacgcgcgtagagccgtcgcttcaggccgccttcatcgag
tatggcggcaaccggcacggcttcctggccttcagcgaaatccatcccgactactaccag
atcccggtcgccgaccgtcaggcgctgatcgaggccgacgagcgcgctcatcgcgaggcc
gaggaagagcacgagaaccgcggccatcgccgccggtcgcgtcaccgcaacgcccgtcgc
cgcggccatggcgagcgcgtccagagcgaggtgatcgagggcgctggcgacgcgcaggcg
cagccggccaatgaggctcacgaacaccacgccgatgccgagcatcatgaccatgatacc
gggcatcacgatcatggcgtgatcgcccatgaagatcacgagcatgatgcgcatgatcat
gcccatcacgaggagcatgagcaccacgaccatgatcacgagcatcaccatgctcatggt
cacgacgatcacgatcatgaccgccacgaccacgatcatgagcacgatcacgaccacgct
ccggcagtgagcgaggcgccggccgccgacacccagtccgaccccgtggtcgcggcggtc
gaagcgtcggctgcgtctgccgcgcctgaggtcgtcgagacggtcgaggtcaatcatgag
cctgaccgggcccatcaggaacaggtcgaagagaacgccgcgcatgccgacgacgctccg
catatcgctgcggacgaagttcacgccaccgcggatgagcacgcgggcgccgaatacgcc
ccgttgactgatgcgaccgcgtccgaggcccggcatggcgacgaggccggcgaagatgac
gacgaggacgacggcgaggaaggcgaggaagaggatgtcgtcgagtccgtcggcggcgac
gacgtgctcgaggaggttccggagcgcgcattccgcccgcgccgccagtacaagatccag
gaagtgatcaagcgccggcaggtgatgctggtgcaggtcgtcaaggaagagcgcggcaac
aagggcgccgcgctgaccacctatctgtcgctcgccggccgttacgccgtcttgatgccc
aacaccgcgcgcggcggcggcatcagccgcaagatcacctccgcccaggaccgctcgcga
ctgaaggaagtggtgcaggatctcgacgtgcccgagggcatggggatcatcctgcgcacc
gccggcgcctcccgcagcaaacccgagatcaagcgcgacttcgagtacctgatccggatg
tgggaaacggtgcgcgacctgacgctgaagtcgcaggcgccgacgctggtctacgaggaa
ggctcgctgatcaagcgctcgctgcgcgacctctacaacaaggagatcgacgagatccag
gtggcgggcgaagccggctaccgcgaagcgcgcgatttcatgaagatgctgatgccggcc
aacgtgcgcgcggtgaagcagtatcgcgacggccagccgctgttctcgcgcatgggcgtc
gaaagccagctcgacgcgatgttctcgccaaccgtgcaactgcgctccggcggctacatc
gtcatcaaccagaccgaggcgctggtctcgatcgacgtcaactccggccgcgccacgcgc
gagcaccatatcgaggacaccgcgctcaagaccaacctggaagcggcggaagaagtcgcg
cgtcaattgcgtctgcgcgatctcgcgggcctgatcgtcatcgacttcatcgacatggac
gagaagcgcaacaaccgcgcggtcgagcgcaagctgtccgactgcctgcgccaggatcgc
gcgcggatccaggtcggccgcatctcgcatttcggcctgctggaaatgtcgcgccagcgc
atccgcgccagcgtgctcgaaagctcgaccgagccctgcccgcaatgcggcggaagcggt
cacgtccgctcggtctcgtcggtggcgctgcagctgctgcgcggcatcgaggaaatcctg
atgaagggcgctacccacaatctggtggtccgcacccgcaccgacgtcgcgctctacgtg
ctcaaccacaagcgcggccatctgcgcgacctcgaagactccttccgggtctcgctgtcg
atcgtcgccgacgccacggtgcacggccagcaatcctacatcatcgatcgcggcgagcag
gtgcatacgctcgaggccgccaaggcgctgctggccgcgcaggccgccgccgcgccggcc
caggcggatgaggtcgacgacgaggaagagctgctcgaatacgagaccgagaccgacgag
accgaaggccttgccgatgagcagaccgccggcgaggaagcctctgccgccgagggcgaa
ggcgacggtcagcgccgcaagcgccgccgccggcgccgcggccgcggtggtgccaacgaa
gcgcgcgagggcgctccgccgccgcgcgaggacggcgatctgatgcacgtcctgcccgag
ggcaccgaggcggttgccgcgcaggacgccgagggtgacgaggacgaaggcgacgaagcg
cagggcgcagcccgcgatgaccagtccgcaagtgaggccggcaacggcgatcgccgcccg
cgccgccgcggacgtcgtggcggccgccgccggcgcggcagcggaccggatgacggtctc
gctggatcgatcgccgacgagctgagccctgccgcagcgccggaggccgccgacgcggtc
gccgatttcgatagccatgacgcggagccggctcccgcgctcgcgcagcccgagctgttc
gcccagccgcaggaatggcagccgaccgaggctgcacctgtcgaggctgcacctgtcgag
gccgttgcggctcccgcgccggaggctgctgccgcagccgccgaggacgcggccgccgaa
agcgaccgcgcgcagcggcgccgttcgacggtgcgcgaaaaggtcagcttcgcgtcgagc
ccgcagcctgaaacaccagcgcacgcgctggctcagagcccagctgaggaagccgcccct
gagcctgcagccgttgcccaggaggcggcaccggccgctacggccgagggtccggcccgc
aagggctggtggtcgcgccgcttcggcggcggcggcaactag
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