Bradyrhizobium septentrionale: HAP48_0038265
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Entry
HAP48_0038265 CDS
T07866
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsep
Bradyrhizobium septentrionale
Pathway
bsep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HAP48_0038265 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsep03400
]
HAP48_0038265 (mfd)
Enzymes [BR:
bsep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HAP48_0038265 (mfd)
DNA repair and recombination proteins [BR:
bsep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HAP48_0038265 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UGY14350
LinkDB
All DBs
Position
complement(7656657..7660175)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQPMKSPAAMLAPGRVLTIANVAEGAEGLVISDLARAIAAQPKRPAVSLAVVCRDGARM
QQLARALEFFAPDIAVMQVPAWDCQPYDRVSPHSGILAQRLTALAKLSRLVGSDKPLIVL
TTVNAAVQRVPARGLVAAQALSVAPGNVVPMDSVVAWLEHNGYTRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRAFDAETQRTLLDMRGLDLVPVSEFQLTTETIRRF
RMGYVAAFGAPERDDQLYEAVSEGRRHPGMEHWLPLFQERMDTLFDYLDGAAVAIEPQTE
DAARERFTQIADYYEARREALEHPGSGAIYKPLPPDQLYLTEAEWTKLLGDAPLARLTPF
AVPEGSPDMFDAGARQGRNFAPERTDGNVNVFEAVVGHIGALQSQRKKVIVALWSEGSRD
RMGAMLRDHKLLNTTSVNTWRIVQATPRNETMLAVVGMESGFETDEFAVISEQDILGDRL
VRPRKASRKLDNFISEVTSLATGDLVVHVEHGIGRFVGLQTLEVSGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDSANVELDRLGGGGWQARKAKLKNRIREIAGELIKIAAERQLH
EAPKFPLQPHVYDEFCARFPYEETEDQLGAITSTLKDLEIGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHSRTFTERFRGFPVNIAQASRLVSTKELNQVKKG
LTDGQVDIVVGTHALLGKAIKFKDLGLLIVDEEQHFGVSHKERLKQLRAQVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IEDLAGVKDFLDKNVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLKVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVAEPAADRW
SPQITIGMPVLIPEDYVNDLSVRLSLYRRLADLDTDEEIDNFAAEMRDRFGVLPDEVRYL
FKVAAIKAYCRRANVGKVDAGPKGAVIAFRDNSFAHPERLVSFIRQHGQAAKVRPDMKVV
FFQEWDTPEERLAGTTEILRQLANLAESKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagccgatgaaatcgccggccgcgatgctcgcgcccggccgggtgctgaccatc
gccaacgtcgccgaaggcgccgaggggctcgtcatttcggatctggcgcgcgccatcgcc
gcgcagccgaagcggccggcggtcagcctcgccgtggtgtgccgcgacggcgcgcggatg
cagcagctcgcccgcgcgctggagttcttcgcgcccgatatcgcggtgatgcaggttccg
gcctgggactgccagccctatgaccgcgtctcgccgcattccggcattctggcgcaacgc
ctgacggcgctggcaaaactgtcgcggctggtgggctccgacaagccgctgatcgtgctc
accaccgtgaacgcggccgtgcagcgggtgccggcgcgcgggctggtcgcagcccaagcg
ctgtcggttgcgccgggcaacgtggtgccgatggactcggtcgtggcctggctcgagcac
aacggctacacccgctcgtccacggtgcgcgagcctggcgaatacgccgtgcgcggcggc
attctcgacctgtttccggccggcctcgaccagccggtgcggttcgacttcttcggcgat
agcctggaatcgatccgcgctttcgatgccgagacccagcgcacgctgctcgacatgcgc
gggctcgacctcgtgccggtctcggaattccagctcaccaccgaaaccatccgccgcttc
cgcatgggctatgttgcagcgttcggcgcgccggagcgcgacgaccagctctatgaggcg
gtctccgaggggcggcgccatcccggcatggagcactggctgccgctgttccaggagcgg
atggacacactgttcgactatctcgatggtgcagcggttgcgatcgagccgcagaccgag
gacgccgcgcgcgagcgcttcacgcaaatcgccgactattacgaggcgcggcgcgaggcg
ctggagcatccgggcagcggcgcgatttacaagccgctgccgccggaccagctctatctg
accgaggccgaatggacaaaactgctcggcgacgcgccgctggcgcggctgacaccgttc
gcggtgccggaaggctcgcccgacatgttcgacgccggcgcgcggcagggccgcaatttc
gcaccggagcgcaccgacggcaacgtcaacgtgttcgaagccgtcgtcggtcacatcggc
gcgctgcagtcgcagcgcaagaaggtcatcgtcgcgctgtggagcgaaggctcgcgcgac
cgcatgggcgcgatgctgcgcgaccacaagctgctcaacacgaccagcgtcaatacctgg
cggatcgtgcaggcgacgccgcgtaacgagaccatgctggccgtggtcggcatggaatcc
ggcttcgagaccgatgaattcgccgtcatcagcgagcaggacattctcggcgaccgcctg
gtgcggccgcgcaaggcgagccgcaagctcgacaatttcatctcggaggtgacgagcctg
gcgaccggcgatctcgtcgtgcatgtcgagcacggcatcggccgcttcgtcgggctgcag
acgctggaagtctccggcgcgccgcatgactgtcttgagctgcattacgccgccgagaca
aagctgttcctcccggtcgagaacatcgagctgctgtcgcgctacggctccgacagcgcc
aatgtcgagctcgaccgtctcggcggcggcggctggcaggcgcgcaaggcgaagctgaag
aaccgcatccgcgagatcgcgggcgagctgatcaagatcgccgccgaacgacagctgcac
gaggcgccgaaattcccgctgcagccgcatgtctatgacgagttctgcgcgcgattccca
tacgaagagaccgaggatcagctcggtgccatcacctcgaccttgaaggacctcgaaatc
ggccggccgatggaccggctgatctgcggcgacgtcggcttcggcaagaccgaggtggcg
ctgcgcgcggcattcgccgtggcgctggagggcaagcaggtcgcggtcgtggtcccgacc
acgctgctggcgcgtcagcactcaaggaccttcaccgagcgcttccgcggcttcccggtc
aacatcgcgcaggcctcgcggctggtctcgaccaaggaattgaaccaggtcaagaagggg
ctcacagatggccaggtcgacatcgtcgtcggcacccacgcgctgctcggcaaggccatc
aagttcaaggatctcggccttctgatcgtcgacgaggagcaacatttcggcgtcagccac
aaggagcggctgaagcagctccgcgcccaggtccatgtgctgacgctgtcggcgaccccg
atcccgcgcaccctgcaattggctttgaccggtgtccgcgagctctcgatcattgcctcg
ccgccggtcgaccgcctcgcggtgcgcaccttcgtcgcgccgcacgatcccctgatgatc
cgcgaggcgctgctgcgcgaacgctatcgcggcgggcaggcgttctatgtcgtgccgcgg
atcgaggacctcgccggcgtcaaggatttcctcgacaagaacgtgccggagatgaaggtc
gcggtcgcccacggccagatgccgccgaccgtgatcgaggacatcatgtcggcgttctac
gacggcaaatacgacatcctgctgtcgaccacgatcgtcgaatccggcctcgacattccg
aacgccaacacgctgatcgtgcaccgcgccgacatgttcggcctcgcccagctctatcag
ctgcgcggccgcgtcggccgctccaagctgcgcgcctatgcgttgttcaccttgccggcg
cagcagaagatcaccgcgcaagcggagcggcggctgaaggtgctgcaatcgctggagacg
ttaggggccggcttccagctcgcctcgcacgacctcgacatccgcggcgccggcaatctg
ttgggcgaggaacagtccggccacatcaaggaagtcggcttcgagctgtaccagtcgatg
ctcgaggaggcgatcgtcaacctcaaggccggcgtcgccgagcccgccgccgaccgctgg
tcgccgcagatcacgatcggcatgccggtcctgatccccgaggactacgtcaacgatctc
agcgtgcggctgtcgctctatcgccggctcgccgatctcgataccgacgaggagatcgac
aatttcgccgccgagatgcgcgatcgcttcggcgtgctgccggacgaggtccgctatctt
ttcaaggtcgccgcgatcaaggcctattgccgccgggccaatgtcgggaaggtcgatgcc
gggccgaagggcgccgtgatcgcgttccgcgacaacagctttgcgcatccggagcggctg
gtgtcattcatccgccagcacggccaggccgccaaggtgcggcccgacatgaaggtggtg
ttcttccaggaatgggatacgccggaagaacggctcgccggcaccaccgagatcctgcgc
cagctcgccaatctcgctgagagcaagaaggcggcttag
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