Burkholderia semiarida: R0290_02900
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Entry
R0290_02900 CDS
T10421
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bser Burkholderia semiarida
Brite
KEGG Orthology (KO) [BR:
bser00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bser03016
]
R0290_02900
Enzymes [BR:
bser01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
R0290_02900
Transfer RNA biogenesis [BR:
bser03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
R0290_02900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
XCV60724
LinkDB
All DBs
Position
1:632556..634640
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AA seq
694 aa
AA seq
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MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFDKPAASELMQEADTA
AQQIDLDFLWECAPADEFAYTALAAEYFGATYGPVERAALVLRLHGSPVYFRRKGRGQYQ
RAPEEQLKMALASLERKRQQALVQAQYEEELKAGKLPEAFAGKVLGLLTRPDKNSIEYKA
MEAAAGARGVSPARLMLDCGGIESPRALHEARFLAEFFPHGTGFPPVTVGPLPDDLPRAN
VEAFSIDDITTTEIDDAFSVEHLSDGRVRIGVHIAAPALGIVRGDPVDAIARARLSTVYM
PGDKITMLPDDVVDVFTLKEGDYRPALSLYIIVNRETQEIVANETRAELVFVKSNLRHNT
LDELVNEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVARAGYGLKREVQRNTDYNFYV
EGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRGFGAPGPKRTRM
QTTAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAV
VQGFDDTYTAYADYQRRMEYFWCLRWLAQEQKKQVVASVVKGDLVRLEEIPLLLHVPGLG
VHARGTRVLLDVMSLDELTIEASVRLLNVLDAPTVTSGDAADEEDDAEGGDDTLVDAQDA
SAQAEAEALAESGDAAAEGGEAAGGNDGEAGRAS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggcagtttcaaggcgggcagcgtgctgtcgcgccag
ggcgacgcatttcaggtcgagttgcccggcgggcggcgcgcgaaggtgcgcgcgaaagac
gtgctgatcgaattcgacaagccggccgcaagcgaactgatgcaggaggccgacacggcc
gcgcagcagatcgatctggattttctgtgggaatgcgcgccggccgacgagttcgcgtac
acggcgctggccgccgaatacttcggcgcgacgtacggcccggtcgagcgcgccgcgctg
gtgctgcggctgcacggctcgcccgtctattttcgccgcaaggggcgcggccagtaccag
cgcgcgccggaagagcagctcaagatggcgctcgcgtcgctcgagcgcaagcgccagcag
gcgctcgtgcaggcgcagtatgaagaggaactgaaggccggcaagctgccggaagcgttc
gcgggcaaggtgctcgggctgctgacgcggccggacaagaattcgatcgaatacaaggcg
atggaagcggcggccggcgcgcgcggcgtgtcgccggcgcggctgatgctcgactgcggc
ggcatcgagtcgccgcgtgcgctgcacgaagcgcgctttctcgcggaattcttcccgcac
ggcacgggctttccgcccgtcacggtcggcccgctgccggacgacctgccgcgcgcgaac
gtcgaggcgttctcgatcgacgacatcacgaccaccgaaatcgacgacgcgttctcggtc
gagcacctgtccgacggccgggtgcggatcggcgtgcacatcgcggcgccggcgctcggc
atcgtgcgcggcgacccggtcgacgcgatcgcgcgtgcgcgcctgtcgaccgtctacatg
ccgggcgacaagatcacgatgctgccggacgacgtggtggacgtgttcacgctgaaagag
ggtgactatcgcccggcgctgtcgctgtacatcatcgtcaaccgcgagacgcaggagatc
gtcgcgaacgagacgcgcgcggagctcgtgttcgtgaagagcaacctgcgccacaacacg
ctcgacgagctcgtcaacgaagagacgctcgcggccggcaccggcgactatccgcacaag
gacgacatcgccgtgctgtggccgctcgcgcaggcgctgttcgagaagcgccaggtcgcg
cgcgcgggctacgggctgaagcgcgaggtgcagcgcaacaccgactacaacttctacgtc
gaaggcgagcacgtgacgatcacgccgcgccgccgcggctcgccgctcgacctgatcgtg
tcggagctcgcgatcctcgcgaactcgacctggggcgcgttcctgcacgaccatacggtg
ccgggcatctaccggtcgcagcgcggcttcggcgcgccgggcccgaagcgcacgcggatg
cagacgacggccgcgccgcacgaaggcctcggcgtcgcgcaatacgcgtggagcacgtcg
ccgctgcgccgctacgtcgacctcgtgaaccagtggcagctgctcgcgtgcgtgcagcac
ggcgtcaccgcgaagctcgccgcgccgttcaagccgaaggacgccgatctctacgcggtc
gtgcagggcttcgacgatacgtatacggcctacgccgactatcagcgccggatggagtac
ttctggtgcctgcgctggctcgcgcaggagcagaagaagcaggtggtcgcgagcgtcgtg
aagggcgatctcgtgcgcctcgaggaaatcccgctgctgctgcacgtgccggggctcggc
gtgcatgcgcgcggcacgcgcgtgctgctcgacgtgatgtcgctcgacgagctgacgatc
gaggcgtcggtgcggctcttgaacgtgctcgacgcgccgaccgtgacgagcggcgacgcg
gccgacgaagaggatgacgccgaaggcggcgacgatacgctggtcgacgcgcaagacgcg
tcggcgcaagccgaggccgaggcgctggccgaatcgggcgacgcggcggcagagggcggc
gaggccgcgggcggtaacgacggcgaagcggggcgcgcatcatga
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