Burkholderia semiarida: R0290_11015
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Entry
R0290_11015 CDS
T10421
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bser Burkholderia semiarida
Brite
Enzymes [BR:
bser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
R0290_11015 (hrpA)
Messenger RNA biogenesis [BR:
bser03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
R0290_11015 (hrpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XCV59179
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All DBs
Position
1:complement(2378591..2382811)
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AA seq
1406 aa
AA seq
DB search
MSNVSKSPAPTRANTPSAKHPDGAADAREQQGQPPRGQQDKPAGTPAHAPRGPRNDERRG
DARQPAAKGAPQAAGERAPRRERAPRAAVAPNPVPPITYPESLPVSGKRDEIARAIAGHQ
VVIVCGETGSGKTTQLPKICLDLGRGLGAGGTGLIGHTQPRRLAASSTGRRIAEELGTPF
GEVVGYKVRFTDNLAPGASVKLMTDGILLAETQTDPLLQAYDTLIIDEAHERSLNIDFLL
GYLKEILPRRPDLKLIVTSATIDADRFARHFGTDERPAPVIEVSGRLYPVEMRYRPVAED
RPAVKNAEGTGGRDRVKTAREAERDLMDAIVDAVDELCREGPGDVLVFLPGEREIREAAE
ALRKHHPPHTEILPLFARLSAADQDKVFKASNARRIVLATNVAETSLTVPGIRYVVDTGL
ARVKRYSYRNKVEQLQVESISQAAANQRAGRCGRVADGVCIRLYEESDYQARARFTDPEI
LRSSLASVILRMKSLHLTAIESFPFLEPPPGRAIADGYQLLNELGAVDDDNALTPLGREL
ARLPLDPRVGRMILAARDQQSLREVLIIASALSVQDPRDRPIEAQEQADQAHRRFADERS
EFLQWLKIWAWFEEAVAHKKSNRQLVDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRL
NEVEATYEQIHLALLTGLLGNIGMKADDDPHYLGARGIKFYLWPGSALAKKAGRWVMAAE
LVETSRLYARCLAKIEPEWVEKIGAHLLKKSLSEPHWEKRPAQVSAFERATLYGLPIYHR
RRVAFGKQDPARARELFIRGALVEGEFDTKLPFFAHNRKLLADIEQLEHKSRRQDVLVDD
ELIYAYYDQAIPEGIHTGAAFERWYRDEVRKGGQAEDKQRLLYLSRDDLMRHEAAGVTTD
LFPKRATMAGVEMALTYHFEPGTPRDGVTLAVPLFALNQVDARRCEWLVPGMLKEKVQLL
LKSLPQKLRRHCVPLPEYAAGFVERMGRERFGAGGLVEALIADVRGETQVAMKTADFKLE
TLPAHLFMNFKVIDEHGRQLAMGRNLAQLRQELGAQAQQQFQKIAAASTLAPGGDAGAGD
AAGAPAPAAAPASAAKGGKPGKGAAPQTAAPRMAAPTETGATALYENLTTWNFGKLPELL
EIRRRGQTLYGYPALVDRGTHCDVEVFDSPEEAARIHRAGLRRLFALQLKEPIKFLEKNL
PGLREMAMQYMSLGTQDELRDQLIDTALDRACLQDPLPDDDASFHTRRDEGRSRLNLLAQ
EIARLVGQILAEYAGLVKKLAQAKPFAQAHADLQQQLAALVGKRFVIDTPYAQLAHFPRY
LKGIALRIDKLKADPARDAKQSAELLPLVQQYQRAVSQRGGVADARLAEFRWLLEELRIS
LFAQELRTPMPVSVKRLHKVWESMQR
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtttctaaaagtcccgcgccgacgcgggccaatacgccgtcggcgaagcac
ccggatggtgcggccgacgcgcgcgagcagcagggccagccgccgcgcgggcagcaggac
aagccggcgggcacgccggcacatgcgccgcgcgggccgcgcaatgacgaacggcgcggc
gacgcgcgccagccggccgcgaagggcgcgccgcaggccgcgggcgagcgtgccccgcgc
cgcgagcgtgcgccgcgggccgccgtcgcaccgaaccccgtcccgccgatcacatacccc
gaaagcctgcccgtgtcgggcaagcgcgacgaaatcgcgcgcgcgatcgccggccaccag
gtcgtcatcgtctgcggtgaaacgggctcgggtaagaccacgcagttgccgaagatctgt
ctcgatctcggccgcggcctcggcgccggcggcacgggcctgatcggccatacgcagccg
cggcgcctggccgcatcgtccaccggccgccggatcgccgaggaactcggcacgccgttc
ggcgaggtggtcggctacaaggtgcgctttaccgacaatctcgcgccgggcgcgtccgtg
aagctgatgacggacggcatcctgctcgccgagacgcagaccgacccgttgctgcaggcg
tacgacacgctgatcatcgacgaggcgcacgagcgcagcctgaacatcgacttcctgctc
ggctatctgaaggagatcctgccgcggcggcccgacctgaagctgatcgtcacgtccgcg
acgatcgacgccgaccgcttcgcacgccatttcggcaccgacgaacgtccggcgcccgtg
atcgaggtgagcgggcggctgtatccggtcgagatgcgttaccgccctgtggccgaggat
cgtccggcggtgaagaacgcggaaggcacgggcggccgcgatcgcgtgaagaccgcgcgc
gaggccgagcgcgacctgatggacgcgatcgtcgacgcggtcgacgagctgtgccgcgaa
ggccccggcgacgtgctggtgttcctgcccggcgagcgcgagatccgcgaggcggccgag
gcgctgcgcaagcaccatccgccgcataccgagatcctgccgctgttcgcgcggctgtcg
gcggccgaccaggacaaggtgttcaaggcgtcgaacgcgcgccgcatcgtgctcgcgacc
aacgtggccgaaacctcgctgacggtgccgggcatccgctacgtggtcgacaccggtctc
gcgcgcgtgaagcgctattcgtaccggaacaaggtcgagcaactgcaggtcgagtcgatc
tcgcaggcggccgcgaaccagcgcgcgggccgttgcggccgcgtggccgacggcgtgtgc
atccgcttgtacgaggaaagcgactaccaggcgcgcgcacgcttcaccgacccggaaatc
ctgcgctcgtcgctcgcgtcggtgattctgcggatgaaatcgctgcacctgactgcgatc
gaatcgttcccgttcctcgagccgccgcccggccgcgcgatcgcggacggctaccagttg
ctcaacgagctcggcgcggtcgacgacgacaacgcgctgacgccgctcggccgcgagctc
gcgcggctgccgctcgacccgcgcgtcggccggatgattctggccgcgcgcgaccagcag
tcgctgcgcgaggtgctgatcatcgcgagcgcgctgtccgtgcaggatccgcgcgatcgc
ccgatcgaagcgcaggagcaggccgaccaggcgcaccgccggttcgccgacgagcgctcc
gaattcctgcagtggctgaagatctgggcgtggttcgaggaagccgtcgcgcacaagaag
tcgaatcgccagctcgtcgacgcctgccggcagaatttcctgtcgcacctgcggctgcgc
gagtggcgcgacgttcattcgcagctgctgacggtcgtgcgcgagcacggctggcgactc
aacgaagtcgaggccacctacgaacagattcatctggccctgttgacgggcctgctcggc
aacatcgggatgaaagcggacgacgatccgcattacctcggcgcgcgcggcatcaagttc
tacctgtggcccggctccgcgctcgcgaagaaggccggccgctgggtgatggcggccgaa
ctcgtcgagacgagccggctgtacgcgcgctgcctcgcgaagatcgagcccgagtgggtc
gagaagatcggcgcgcatctgctgaaaaaatcgctgtcggagccgcactgggaaaagcgt
ccggcgcaggtgagcgcgttcgagcgcgcgacgctgtacgggttgccgatctaccaccgg
cggcgcgtcgcgttcggcaagcaggacccggcgcgcgcacgtgaattgttcatccgcggc
gcgctggtcgaaggcgaattcgacacgaagctgccgttcttcgcgcacaaccgcaagctg
ctcgccgacatcgagcagctcgaacacaagtcgcgtcgccaggacgtgctggtcgacgac
gagctgatctacgcgtactacgaccaggcgattccggaaggcatccatacgggcgccgcg
ttcgagcgctggtatcgcgacgaggtgaggaagggcggccaggcggaggacaagcagcgg
ctgctgtacctgtcgcgcgacgacctgatgcgccacgaggcggccggcgtgacgaccgac
ctgttcccgaagcgcgcgacgatggccggcgtcgagatggcgctcacgtatcacttcgag
cccggcacgccgcgcgacggcgtgacgctcgcggtgccgctcttcgcgctgaaccaggtc
gatgcgcgccgctgcgagtggctcgtgccggggatgctgaaggaaaaggtgcagttgctg
ttgaagtcgctgccgcagaagctgcgccggcactgcgtgccgctgcccgagtacgcggcg
ggcttcgtcgagcggatggggcgcgagcgctttggcgcgggcgggctcgtcgaggcgctg
atcgccgacgtgcgcggcgagacgcaggtcgcgatgaagacggccgatttcaagctcgag
acattgcccgcgcacctgttcatgaatttcaaggtgatcgacgagcacggccgccagctc
gcgatggggcgcaatctcgcgcagcttcgccaggagctcggtgcgcaggcgcagcagcag
ttccagaagatcgcggcggcgtcgacgctcgcgccgggcggcgacgccggcgcgggcgat
gcagccggcgcgccggcgccggccgccgcaccggcttcggccgcgaagggcggcaagccg
ggcaagggcgccgcgccgcagacggccgccccacggatggccgccccgacggaaaccggc
gcgacggcgttgtacgagaacctgacgacgtggaatttcggcaagctgcccgagctgctg
gaaatccgccggcgtggccagacgctgtacgggtatccggcgctcgtcgaccgcggcacg
cattgcgacgtcgaggtgttcgattcgccggaggaggccgcgcgcatccaccgggccggc
ttgcggcggctgttcgcgctgcagttgaaggagccgatcaagttcctggaaaagaacctg
ccgggcctgcgcgagatggcgatgcagtacatgtcgctcggcacgcaggacgagctgcgc
gaccagttgatcgacacggcgctcgaccgcgcgtgcctgcaggacccgctgcccgacgac
gatgcgagtttccacacgcgccgcgacgagggcaggagccggctgaacctgctcgcgcag
gaaatcgcacggctcgtcgggcagatcctggccgaatacgcgggcctcgtgaagaagctc
gcgcaggcgaagccgttcgcgcaggcccatgcggacctgcagcagcaactggccgcgctg
gtcggcaagcgcttcgtgatcgacacgccttacgcgcagcttgcgcatttcccgcgctat
ctgaagggcatcgcgctgcggatcgacaagctgaaggccgatccggcgcgcgacgcgaag
cagtcggccgagctgctgccgctcgtccagcagtaccagcgcgcggtgtcgcagcgcggc
ggcgtcgccgatgcgcggctcgcggaattccgctggctgctggaggaactgcggatttcg
ctgttcgcgcaggaactgcgcacgccgatgccggtctctgtcaagcgtctgcacaaggtc
tgggagtcgatgcagcgctag
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