Burkholderia semiarida: R0290_11950
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Entry
R0290_11950 CDS
T10421
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bser Burkholderia semiarida
Pathway
bser03030
DNA replication
bser03430
Mismatch repair
bser03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R0290_11950 (dnaE)
03430 Mismatch repair
R0290_11950 (dnaE)
03440 Homologous recombination
R0290_11950 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bser03032
]
R0290_11950 (dnaE)
03400 DNA repair and recombination proteins [BR:
bser03400
]
R0290_11950 (dnaE)
Enzymes [BR:
bser01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R0290_11950 (dnaE)
DNA replication proteins [BR:
bser03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
R0290_11950 (dnaE)
DNA repair and recombination proteins [BR:
bser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
R0290_11950 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
XCV59353
LinkDB
All DBs
Position
1:complement(2575046..2578579)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGK
GIKPIAGCDVWIANPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASW
LDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAARWASVFPGAFYIELQRYGQPGAE
AYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQY
FRTQDDMVGLFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLETRLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDPASFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRE
IFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCVLNNLVVLPPDINASHYRFEPVAEADGKRSRTIRYGLGAVK
GSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNPNRAQLIA
SVPLAMEAADQAEANAMQAGLFDMGAESPHAHALVDEPAWDDKRRLQEEKGALGFYLSGH
LFDAYRDEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEIT
IFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTMN
GNADALALRRVLEPHVAKDEPAAANAVEAPAPRGGGRDGGRRPQAPLPNGLAVQIHYSNA
RAQGEMRLGDAWRVKPSDVLLAELRAAFDGSVVEITY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctcgcttcgtccatcttcgcgttcactccgaattctcgattgccgacggc
atcgtgcgcattgacgacatcgtcaaggcggcggccgcggacggccagggcgcgctcgcc
ctcaccgatctcggcaatgcattcggcctcgtccgtttctaccaggaagcccgcggcaag
ggcatcaagccgatcgccggttgcgacgtctggatcgccaatccggacgaccgcgacaag
ccgtcgcggctgctgctgctggtcaaggacaaggtcggttacctgaatctctgcgagctg
ctgtcgaaggcgtggctcacgaaccagtaccgcggccgcgcggagctcgacgcgagctgg
ctcgacggcgagctcgcgcaggggctgctcgcgctgtcgggcgcgcagcagggcgatatc
gggctcgcgctggccgccggcaacgaagaagccgcgcgccgtcacgccgcgcgctgggcg
agcgtattcccgggcgctttctacatcgagctgcagcgttacggccagccgggcgccgag
gcgtacatccagcaggccgcgacgctcgccgcgtcgctgaagctgccggtcgtcgcgacg
cacccgacgcagttcatgaccgacgacgatttcaccgcgcacgaggcgcgcgtgtgcatc
tcggaaggcgacatcctcgcgaacccgcggcggcagaagcgtttcacgaccgaccagtat
ttccgcacgcaggacgacatggtcgggctgttcgccgacctgccgtcggcgatcgcgaac
acggtcgagatcgcgaagcgctgcaacctgaagctcgagctcggcaagccgaaactgccg
ctgttcccgacgccggacggcatgtcgctcgacgactacctggtccagctgtcgaaggaa
gggctcgagacccgcctcgcgcagttgtatccggtcgaagccgagcgcgacgcgcagcgc
gacacgtactacaagcgcctcgaattcgagtgcgggaccatcacgaagatgggcttcccc
ggctacttcctgatcgttgcggacttcatcaactgggcgaagaacaacggcgtgccggtc
gggccgggccgcggctcgggcgccggctcgctggtcgcgtacgcgctcggcatcaccgac
ctcgatccgctgcgctacaacctgctgttcgagcgcttcctgaaccccgagcgcgtgtcg
atgcccgacttcgacatcgacttctgccagcacggccgcgatcgcgtgatccagtacgtg
aaggagaaatacggcgcggacgccgtgtcgcagatcgccacgttcggcacgatggccgcg
aaggcggccgtgcgcgacatcggccgcgtgctcgacctcggctacatgttcaccgacggc
gtcgcgaagctgattccgttcaagcccggcaagcacgtgacgattgccgacgcgatgaag
gaagagccgcaactgcaggagcgctacgaccacgaggacgaagtccatcagttgctcgat
ctcgcgcagcgcgtcgagggcctcacgcgtaacgtcgggatgcacgcgggcggcgtgctg
atcgcgcccggcaagctgaccgatttctgcccgctgtacacgcagggcgacgacggcggc
gtggtcagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ctggggctcacgacgctgacgatcctcgactgggccgagcgctacatccgccgcctcgat
ccgtcgaaggccgactggtcgctcgcgcaggtgccgctcgacgatccagcctcgttccag
atcctgaagaaggccaacacggtcgcggtgttccagctggaaagccgcgggatgcagggc
atgctgaaggatgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgttgtac
cgtccgggcccgatggacctgatcccgagcttctgcgcacggaagcacgggcgcgagaag
gtcgactatccggatccgcgcgtcgaacccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcc
gacttgctgcgtcgcgcgatgggcaagaagaagcccgaggagatggccaagcatcgcgag
atcttcgccgagggtgcggcgaagaacggcctcacgcgcgagaagtccgacgagatcttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggccgcgtatgcg
ctgctcgcgtattacaccgcgtggctgaaggcgcaccatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgattgcgtg
ttgaacaacctcgtcgtgctgccgccggacatcaacgcatcgcattaccggttcgagccg
gtcgcggaagccgacggcaagcgttcgcgcacgatccgctacggcctcggcgcggtgaag
ggcagcggccagaacgcgatcgaggaaatcctgcgggcccgcgaggaaaaggcgtttacc
gacctgttcgacttctgcgaacggatcgaccggcgcgtcgtcaaccgccgcacggtcgag
gcgctgatccgcgccggcgcgttcgattcgctgaacccgaaccgagcgcaattgatcgcg
tcggtgccgctcgcgatggaagcggccgaccaggccgaggcgaacgcgatgcaggccggc
ctgttcgacatgggcgccgagtcgccgcatgcgcacgcgctcgtcgacgaacccgcgtgg
gacgacaagcgccgtctgcaggaagaaaagggtgcgctcggtttctacctgtccggccac
ctgttcgacgcgtatcgcgacgaagtgcgtcgcttcgtgcggcagaaggtcggcgacctg
aaggaaggccgcgacaagctcgtcgccggcatcatcgcgtcgctgcgcacgcagatgacg
cagcgcggcaagatgctgatcgcgctgctcgacgacggctcgggccaatgcgagatcacg
atcttcaacgaacagttcgaggcgaacaaggcgctgttcaaggaagacgagctgctgatc
gtgcaggggcaggcgcgcaacgacgcgttcaccggcggcattcgcttcacggccgatacc
gtgatggatctcgaacgcgcgcgcagccgctatgcgcaggccgtgcggctgacgatgaac
ggcaacgccgacgcgcttgcgctgcgccgcgtgctcgagccgcatgtggcgaaggacgag
ccggctgccgcgaacgcggtcgaagcgcccgcgccgcgcggcggcggacgcgatggcggt
cgccgcccgcaggcgccgctgccgaacgggctggcggtgcagattcactacagcaatgcg
cgcgcgcaaggcgaaatgcgtctgggcgacgcatggcgcgtgaagccgagcgacgtgctg
ctggcggagttgcgagcggcgttcgacggcagcgtcgtcgaaatcacgtactga
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integrated database retrieval system
