Burkholderia semiarida: R0290_13835
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Entry
R0290_13835 CDS
T10421
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bser Burkholderia semiarida
Pathway
bser03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bser00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0290_13835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bser03019
]
R0290_13835
Enzymes [BR:
bser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R0290_13835
Messenger RNA biogenesis [BR:
bser03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R0290_13835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
Sacchrp_dh_NADP
Cas3-like_C_2
DegT_DnrJ_EryC1
CMS1
CARD_2
Motif
Other DBs
NCBI-ProteinID:
XCV59706
LinkDB
All DBs
Position
1:2973207..2974646
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AA seq
479 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQQPRGGGGGNRQPRAGGSGQPAAKRD
GNAQPKAAQQKAAKPRTQGGAGGNGGGRPAGGGNGARPASGNAAHPNRNRSSRSGQRGH
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctggccgaaccgctggtcaaggcggtcaacgagctcggc
tatacgtcgccgactccgatccagcagcaggccattccggccgtcctcggcggcggcgac
ctgctcgccggcgcgcaaaccggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgccgagcaccgcggcgcgaagcgcgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtgcgcgcgtacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccggggcgcctgctcgaccac
atgcagcagaagaccatcgacctgtcggatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
cagcgccagaacctgctgttctcggccaccttctccgatgaaatcaaggcgctcgccgac
agcctgctcgactcgcccgcgctgatcgaggtcgcgcgccgcaacacgaccgccgagagc
gtcgcgcagaagatccatccggtcgaccgcgatcgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggctcgccgagcagttgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgtacgcgcgcgctggccgagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgatatcgccgcgcgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgatctgccgaacgtgccggaagactacgtgcaccggatcggccgcacgggccgcgcg
ggcgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcgggcttcgaacccgat
ccgaacgcgaaaccggagccgatccagcagcgccgtggccagcagcagccgcgtggcggt
ggcggcggcaatcgtcagccacgtgccggcggctcaggccagccggccgcgaagcgcgac
ggcaacgcgcaaccgaaggccgcgcagcagaaggccgcgaagccgcgcacgcaaggcggg
gccggcggcaatggcggcggacgtccggcaggcggcggcaacggcgcccgcccggcaagc
ggcaacgccgcgcatccgaaccgcaaccgttcgtcgcgcagcggccagcgcggtcactga
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