Burkholderia semiarida: R0290_22570
Help
Entry
R0290_22570 CDS
T10421
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
bser Burkholderia semiarida
Pathway
bser02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
bser00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
R0290_22570 (pdeR)
Enzymes [BR:
bser01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
R0290_22570 (pdeR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS
PAS_9
PAS_4
Motif
Other DBs
NCBI-ProteinID:
XCV61829
LinkDB
All DBs
Position
2:1427525..1429528
Genome browser
AA seq
667 aa
AA seq
DB search
MDDENDSAVLEAHVGTRSPCWRLGSDSNALELAAVRGLTNVAVALTAEQAARIRALTGVT
SHLVLDIVLYGSPVSLHLVGRKVNTVDWAGTASAYSDTESVAGDLSHGLAFAEQVVSEVN
SLVVILDRNGMVQRFNRLCEEVTGKREVDVIGRSAFELFMSPEQGAQSRSNITGFFASNQ
SFAVERYINTVNGPRLFQFRNKFVQSGSGVDEQFLICSGIDITEERNAQQRLTELANTDV
LTGLPNRHAISERIRAAIAEEDANTRGQVGILFLDLDNFKRVNDHYGHITGDRLLQDVSA
VIGGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQIILERLRTPIHLGLVEVYTSCSI
GIAMYPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLRKALE
EEQFVLHYQPVVDIATGDVHGVEALIRWQSPDRGLVAPVEFIRFAEESGLIAPLGRWVMR
TAAAQAAAWKAKGLGIRIAVNVSARQLQDMNIVHQFASILDGAGLKPSLVDIELTESSFI
EDEEAAIGLMRQFRQLGAEIHLDDFGTGYSSLSQLSRLPLDAIKLDRTFITAIDRNPRSQ
ALVRSVVSLAKALNFAVIAEGVETHAEAEFLKQLDVDHAQGYYYARPMPAQAFEAWLAET
RKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgaaaacgatagcgcggtgcttgaggcgcatgtcggtacgcgcagcccctgc
tggcgtctcggcagcgacagcaacgcgctcgaactcgccgcggtgcgcggcctgaccaac
gtcgcggtcgcgctgacggccgagcaggccgcgcgcatccgcgcgctgaccggcgtcacg
tcgcacctcgtgctcgacatcgtgctgtacggcagtccggtcagcctccatctcgtcggc
aggaaggtcaacacggtcgactgggccggcacggcgtccgcctattccgataccgaatcc
gtcgccggcgatctgtcgcacgggctcgcgttcgccgagcaggtggtgtcggaggtgaat
tcgctcgtcgtgatcctcgaccgcaacgggatggtgcagcgcttcaaccgcctgtgcgag
gaagtgaccggcaagcgcgaggtcgacgtgatcggccgcagcgcgttcgagctgttcatg
agcccggagcagggcgcgcagtcgcgcagcaacatcacgggcttcttcgcgagcaaccag
tcgttcgcggtcgagcgctacatcaacacggtcaacgggccgcgcctgttccagttccgc
aacaagttcgtgcagagcggcagcggcgtcgacgagcagttcctgatctgctcgggcatc
gacatcaccgaggagcgcaacgcgcagcagcggctcaccgagctcgcgaacaccgacgtg
ctcaccgggctgccgaaccgccatgcgatcagcgagcgcatccgcgcggcgatcgcggag
gaagacgccaatacgcgcggccaggtcggcatcctgttcctcgatctcgacaacttcaag
cgcgtcaacgatcactacgggcacatcaccggcgaccggctgctgcaggacgtgtccgcg
gtcatcggcggctgcctgccgtccggcgcgacgctcgcgcggctcggcggcgacgagttc
ctggtgctgttcgagcacggcacgcggccgctgctcgaggcgaccgcgcagatcatcctc
gagcggctgcgcacgccgatccacctcgggctggtggaggtctacacgagctgctcgatc
ggcatcgcgatgtatccgcagcacggcgattcgctcgagacgctgatccgcagcgccgat
accgcgatgtacgtcgcgaaggaagaaggcaagcatacgtaccgcgtgttctcgctggag
atgaaccagaaggtcgcgaagtacatgtggctcgacacgaacctgcgcaaggcgctcgag
gaagagcagttcgtgctgcactaccagccggtcgtcgacatcgcgacgggcgacgtgcac
ggcgtcgaggcgctgatccgctggcagtcgcccgatcgcgggctcgtcgcgccggtcgag
ttcatccgtttcgcggaagagtcggggctgatcgcgccgctcggacgctgggtgatgcgt
accgcggccgcgcaggccgccgcgtggaaggcgaaggggctcggcatccggatcgcggtg
aacgtgtccgcgcggcagttgcaggacatgaacatcgtgcaccagttcgcgtcgattctc
gacggcgcggggctcaagccgagcctcgtcgacatcgagctcaccgagagcagcttcatc
gaggacgaagaagcggcgatcgggctgatgcggcagttccgccagctcggcgcggaaatc
cacctcgacgatttcggcaccggctattcgtcgctgtcgcagttgtcgcgcctgccgctc
gacgcgatcaagctcgaccgcaccttcatcacggccatcgaccgcaatccgcgctcgcag
gcgctggtgcgctccgtcgtgtcgctcgcgaaggcgctgaatttcgcggtgatcgccgaa
ggcgtcgaaacgcatgcggaggccgaattcctcaagcaactcgacgtcgatcacgcgcag
ggctactactacgcgcggccgatgccggcgcaggcgttcgaggcgtggctcgcggagacg
agaaagctcaggctgatcgcctga
DBGET
integrated database retrieval system
