Bacillus subtilis subsp. subtilis 6051-HGW: BSU6051_19220
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Entry
BSU6051_19220 CDS
T02503
Symbol
yocI
Name
(GenBank) putative ATP-dependent nucleic acid helicase YocI
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bsh
Bacillus subtilis subsp. subtilis 6051-HGW
Pathway
bsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSU6051_19220 (yocI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsh03019
]
BSU6051_19220 (yocI)
03400 DNA repair and recombination proteins [BR:
bsh03400
]
BSU6051_19220 (yocI)
Enzymes [BR:
bsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSU6051_19220 (yocI)
Messenger RNA biogenesis [BR:
bsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSU6051_19220 (yocI)
DNA repair and recombination proteins [BR:
bsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BSU6051_19220 (yocI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AGG61306
LinkDB
All DBs
Position
complement(2094009..2095784)
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AA seq
591 aa
AA seq
DB search
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGT
TIVISPLISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLT
SIEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATP
EVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIR
FVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLK
KLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDTRAAHDVTREAQMVLSCIIRM
KERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFV
VFSDQTLKEMSGKQPVNDDELLSIKGVGEQKRAKYGRLFLQEIQAYARMTD
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgttacatagagcccaatcccttctggctcattattttggttatgagaagtttcggagc
ggccaagatgaagcgatccgcttggtgacggaagcgaggcaaaatacggcctgcattatg
ccgacgggaggcggcaaatcgatttgctatcagattccggcattaatgtttgaagggacg
acgatcgtcatttcaccgttgatttccttgatgaaggatcaagttgatgcgttagaagaa
gcggggattaacgccgcctacattaacagcacacaatccaatcaggaaatatatgagagg
ctgaacggactcaaagaaggggcttataagcttttttacattacaccagagcgactaacg
tccatagagtttatccggattttgcagggcatagatgttcctttggtcgcaatagacgag
gcgcattgtatttctcaatggggccatgatttcaggccaagctacaggaatattgaaatc
ttgttccgtgaattacacgacaagcctgtcatcatggcgttaacagcaacagccacaccc
gaggttcatgatgatatttgcaaacagctgcatattcaaaaagaaaacacggtatatacc
ggattttcccgagagaatttaacctttaaagtagtaaaaggagaaaataaagatcggttt
atagacgaatatgtgcaaaacaacaggcatgaagcaggaattgtctatacagcgaccaga
aaagaagctgatcggatatatgagagattgaaacgaaatcaggtcagggcaggccggtat
catggaggtttggctgatgatgtgagaaaagagcagcaggaaagatttcttaatgatgag
cttcaagtgatggtggcaacctctgcttttggaatgggtattgataaatcaaatatcaga
tttgttctgcatgcacaaatcccgaaagatatggaaagctattatcaagaggcaggacga
gctggacgggacggtcttgccagtgaatgtgttctcctgttttcaccgcaggatattatg
gtgcagcgcttcttaattgagcaatcagaacatgaagagaaacaaaagcaggatttaaaa
aagctgagacaaatggtcgactactgtcatacggaagattgtctgcagcgttttatcctt
atgtatttcggagaaaaggagcctgatgcgtgcggacagtgcggaaactgtaccgataca
agagcggcccatgacgtgacgcgggaggcgcaaatggtcttatcttgtatcattcgcatg
aaagaacggtttggcaagacgatggttgcccaggtgcttgccggctccaaaaataaaaaa
gttcttgaaaacggcttttccgacctttcaacatacgggatattaaaacaccaatccgtt
ggcgaaatcagtgattttatcgaatttcttatttctgacgacttcatcaggatgtcagac
ggaacgtttccgactctttttgtcagcagtaaaggaaggaatgtgctgaaaggagaatta
tcagtagcgagaaaagaagcgttaaaagcggcagcgattactgaaaatgacgagctattt
gaacgattgcgcatggttcggaaagaaattgcggctgagcagggtgttccgccatttgtt
gttttctctgaccaaacgttaaaagaaatgtcaggaaaacagcccgtaaatgatgatgaa
cttttgtctataaaaggagtcggagaacaaaaaagagcaaaatacggccggcttttttta
caagaaatacaggcttatgcaaggatgacagactaa
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