Bacillus shivajii: LGQ02_00350
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Entry
LGQ02_00350 CDS
T07881
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bshi
Bacillus shivajii
Pathway
bshi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LGQ02_00350 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bshi03400
]
LGQ02_00350 (mfd)
Enzymes [BR:
bshi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGQ02_00350 (mfd)
DNA repair and recombination proteins [BR:
bshi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LGQ02_00350 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
Endonuc-BglII
RecG_dom3_C
UBA
MBD_C
Motif
Other DBs
NCBI-ProteinID:
UCZ53312
LinkDB
All DBs
Position
77014..80559
Genome browser
AA seq
1181 aa
AA seq
DB search
MEGLLQSIKQGDDVGSIIDGIEVNMSEQMISGLSGSARSIVIASVFHETKRSQLVVTHNL
FQAQKIYDDLASLVGEEYVFLYPVNELIASEIAVASPEMKGQRIEVLNRLATGKESIIIS
PMAGVRRLLPPKTLWKSYQVQFVLGEEIDLESTLNQLVEMGFQRTDMVSAPGEFSLRGGI
VDIYPLTEEMPIRIELFDTEVDSIRYFNVESQRSMNQINEVKIGPAKEVLLTEEHFQYGA
HQLESKLAESLAKVKDKTTKEKMAEQVSQEIDWLKQRVTFESIYKYMSLFYNDRYTLLDY
FPDNGVISIDEVSRAQEMEQSLEKEEAEWYTTMLSQGATVTELSLSKNWDELFLKANRPI
IYLSLFLRHVPNTNPKNIVNIQSKSMQNFHGQLHLLKSEIDRWKEANYSITLMATDKERA
ERLKQVLADYEIDGAIVSSEQLPVSGQTQIMIGHFTTGFELPLQRTIVITEEEVFKQQIK
KPKRRQKLSNAERIKSYSELKVGDWVVHTNHGIGKYLGIKTLEVGGIHKDYMHISYAGND
KLYVPVEQIDQVQKYVGSEDKEPKMYALGGNDWKKVKTKVRSSVEDIADDLIKLYAEREA
SKGHAFSQDGPEQQEFESSFPYQETEDQIRAIEEIKKDMERERPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETIRERFQDFAINVGLLSRFKSRKEQKETID
GLNRGTTDIVVGTHRLLSKDITFKDLGLLIVDEEQRFGVTHKEKIKRLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHNEPLIREAIERELARGGQVYYLYN
RVEDIETMADKISMLVPDANVRYAHGKMSESELESVMLDFLEGSAEVLVTTTIIETGVDI
PNVNTLIIHDADRMGLSQLYQLRGRVGRSNRVAYAYFTHQRDKVLTEVAEKRLQSIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLKEAIDERKDHSTNEKPKV
ETPDIELDIQVDAYIPENYISDSKQKIDMYKRFKGLETEQDIQDLQTEMIDRFGEYPEEV
DYLFQVSRIKQYANQYGLDTIVEKNNECKVLLSEEETNNIDGSKLFSVVNKISRKLNLSM
TGNQITIHLKTKSLTDKEYLTTLENVLSKLKEVRKEATSAN
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggaaggattactgcaatccattaaacaaggggatgatgttggtagcatcattgatggc
atcgaagtaaatatgtccgagcaaatgatatctggtttgagtgggtcagccagatctatt
gttattgcttcggtttttcacgaaacaaagcgttctcaattagttgtaactcacaacctt
tttcaagcccaaaaaatatatgatgatcttgcctctctcgtaggggaagagtatgttttc
ttatatccagtaaatgaattaattgcatcggagatagctgtagctagtccagaaatgaaa
ggacaaagaattgaagttttaaatcgtctagctacaggaaaagagtccattatcatttca
ccgatggcaggagtaagaaggttattaccgcccaaaacactttggaaatcctatcaagtt
cagtttgtcttaggagaagagatagaccttgagtctacattaaatcaactagtagaaatg
ggattccaacgtactgatatggtatctgcaccaggtgaattcagtttacgaggtgggatt
gttgatatctacccattaacagaagagatgcccataagaattgaactatttgatacagag
gtagattcaataagatattttaatgttgaatcccaacgttcaatgaatcaaataaacgaa
gtgaaaatcggccctgcgaaggaagtattacttacagaggaacattttcaatatggagct
catcaactagagtctaaactagcagaaagtttagctaaagttaaagataaaacgacaaag
gaaaagatggctgaacaagttagtcaagaaatagattggctgaagcaacgtgtgacattt
gagtctatttataaatatatgtcattgttttataacgaccgatacaccttgctagattac
tttcctgataatggtgttatatccatcgatgaagttagtcgtgctcaagagatggaacaa
agcctagaaaaagaagaagcggaatggtatacaacaatgctctctcaaggagcaacagtg
acagaattaagcctttcaaagaactgggatgaactctttttgaaagcgaatcggccgatt
atttatttgagtttgtttttacgtcatgtaccaaatacaaatccaaaaaatatcgtcaat
attcaaagtaaatctatgcaaaacttccacggtcaacttcatttattaaagtctgagatt
gaccgttggaaggaagcgaattattccattacattgatggctactgacaaagaacgtgca
gagcgattaaaacaagtacttgctgattatgaaatagatggggcgatcgttagctctgag
cagctaccggtaagtggacaaacgcagattatgatcggacacttcacgacagggtttgaa
cttccattgcagcgaacgattgtcattacagaagaagaagtgtttaaacaacagataaaa
aagccaaagcgaagacaaaagctttcaaatgctgaacgtattaaaagctattctgaatta
aaagttggagattgggttgttcatacgaaccacggaattggtaagtatttggggattaaa
acgctagaagtcggcggaattcataaagattatatgcatatttcctatgcagggaatgac
aagttatatgttcctgttgagcaaatcgaccaagtgcaaaagtacgttggttcagaagat
aaagagcctaaaatgtatgcgttaggcggaaacgattggaaaaaggtgaaaacaaaagtt
cgctcatctgttgaagatattgctgatgatttaatcaaattgtatgcagagcgcgaagca
agcaaaggacacgccttttctcaagatggacctgaacaacaagaatttgaatcttcgttt
ccatatcaagaaacggaagatcaaatccgagcaattgaagagattaaaaaggatatggag
cgagagcgtccgatggatcgcttactttgtggtgatgttggatacggaaaaacagaagtc
gctcttcgcgctgcttttaaagcaattatggatggaaaacaagtggcctttctcgtacca
acgacaattttggcgcaacagcactatgaaaccattcgtgaaaggtttcaagattttgca
attaacgttggattgttaagccgttttaagtcaaggaaagaacaaaaggaaaccattgat
gggctaaatagaggtacgacagacattgttgtaggaactcaccggttgctctctaaagat
attacatttaaagatttaggtttgttaattgttgatgaagaacaacgctttggcgttact
cataaagagaagataaaaaggctaaaagcaaacgttgatgttcttacgttaacagctaca
ccaattccaaggactttgcatatgtcaatgcttggtgttcgtgacttatcagtgatcgaa
acgccaccagaaaatcgttttcctgtacagacgtacgtcgtagagcataatgaaccatta
ataagagaagcgatagagcgtgagttagctcgaggagggcaagtatattacttatataat
cgagttgaagacattgaaacgatggcagataaaatctctatgctcgttcctgatgccaat
gtgcgatatgctcatgggaaaatgtcagagtcagaattagagtctgtcatgctcgatttt
ctcgaaggaagtgctgaagtattagtgacgacaacgattattgagacgggcgttgatatt
ccgaatgtaaatacgctcattattcatgatgctgaccgaatggggctatctcaactttat
caattgagagggcgtgtcggaaggtccaacagagtggcatatgcttactttacacatcag
cgagataaagtcttaacagaagtcgctgagaaacggttacagtccattaaagaatttacc
gagctaggttctggatttaagattgcaatgagagacttatcgattcgcggtgctgggaat
ttgttaggggcagaacagcatggatttatcgcttctgttggatttgatttgtattctcaa
atgttaaaagaagcaattgacgaacgaaaagaccattcaacgaatgaaaaaccaaaagta
gaaacgcctgatatagaacttgatattcaagtcgatgcttatataccagagaattatatt
tcagactccaagcaaaaaattgatatgtataagcgatttaaagggctagagacagagcaa
gatattcaagacttacaaacagaaatgattgaccggtttggggagtacccagaagaagtt
gattatttattccaagtgtcacgcattaagcagtacgcaaatcaatatggccttgatacg
atcgttgagaaaaataatgaatgtaaggtgctattgagtgaagaggagacgaacaatata
gacggttcaaagttattctcggttgtaaataaaatttcacgtaaactaaatttatcaatg
acaggtaatcagatcacgatccacttaaaaacaaagtccttaaccgataaagagtattta
accactctagaaaacgtgttatcaaaattaaaggaagtaaggaaggaagcgacatcggcc
aattag
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