Bacillus shivajii: LGQ02_00710
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Entry
LGQ02_00710 CDS
T07881
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bshi
Bacillus shivajii
Pathway
bshi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bshi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LGQ02_00710 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bshi03021
]
LGQ02_00710 (rpoC)
03400 DNA repair and recombination proteins [BR:
bshi03400
]
LGQ02_00710 (rpoC)
Enzymes [BR:
bshi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LGQ02_00710 (rpoC)
Transcription machinery [BR:
bshi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LGQ02_00710 (rpoC)
DNA repair and recombination proteins [BR:
bshi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LGQ02_00710 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UCZ53362
LinkDB
All DBs
Position
147316..150927
Genome browser
AA seq
1203 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTDTGDTPLELKQLLSEKEYRTYREKYGRSFTAQMGAEAIRKLLQ
DIDLDKEVNMLKEELVTAQGQRRTRAIKRLEVLEAFRNSGNNPAWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MALELFKPFVMKELVSKGLAHNIKSAKRKVERVQPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAESRLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGAIGEGNIYKDADEALTAYRNGHVHLHTRVAIP
VGSLGKTNFKEEHEGKLLLTSVGKIIFNEILPGSFPYVNEPTATNLEIETPDKYIVPSGT
DVKKEYENRDVVAPFKKGFLGDIIAEVFKKFKVSQTSVMLDKMKDLGFHYSTKAGITIGV
SDIVVLKDKQEILDDAEKKVDRVVKQFRRGLITEEERYDKVIEVWSAAKDEIQNRLMGTL
EDTNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLKVAAITEGTEVIEPLY
DRLVGRVAFNTIKHPETGEVLVEKDVEMDEDSAKVVEDAGVESVVIRSAFTCDTKHGVCK
RCYGRNLATGAEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEIEGAVSDIKEVNEKKEIVVQGEIETRNYVAPYGARMKVEVGDQVKPG
QELTEGSIDPKELLLVSGVQGVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVV
DAGDTEVLPGSLVEVHQFNEANKDILLRGGTPAMGTPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELVGLKENVIIGKLVPAGTGMQRYRKITSTNVEEEATDEMVEEVS
IQE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtgaataactttgagtatatgaaaattggtcttgcatctccggacaagatt
cgctcttggtctagaggtgaagtgaaaaaaccagagaccattaactatcgtacgttaaag
cctgaaaaagatggattgttttgtgaacgtatttttggaccgcaaaaagactgggaatgt
cattgtgggaagtataagcgagtacgctacaaaggtgtcgtttgtgatcgttgtggtgta
gaggtaactcgcgcaaaagtacgccgtgagcgaatggggcacattgaattagctgccccg
gtctctcatatttggtacttcaaagggatcccaagtcgtatgggtcttgtcttagacatg
tctccgcgttctcttgaggaagttatttatttcgcttcctatgtagtaaccgatactggg
gatacaccattagaacttaaacaacttctttcagaaaaagaatatcgtacgtatcgtgaa
aaatacggtcgttcctttacagcccaaatgggggcagaggcgatccgtaaattgttacaa
gatatagacttagataaagaagtaaatatgttgaaagaagagctcgttacagctcaaggt
caacgtcgaactcgtgctatcaaacgactagaagtgctagaggcattccgtaattcaggg
aacaacccggcatggatgatcatggatgttttaccagtcattccaccagaattacgtcca
atggttcaattagatggtggaagattcgcgacgtctgacttaaacgacttatatcgtcgt
gtgattaaccgaaacaatcgattaaagcgcctattagatcttggggcaccaagcattatc
gttcaaaacgaaaagcgtatgcttcaagaagctgttgatgctttaattgataacgggcga
cgcggtcgtcctgtaacaggaccgggtaaccgtccgctaaaatctctttctcatatgctg
aaggggaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgtagactactctggt
cgttctgttatcgtggtaggaccacacttgaagatgtatcaatgtggtttacctaaagaa
atggcacttgaattatttaaaccttttgtaatgaaagagcttgttagcaaaggtttagct
cacaatattaagagtgcaaaacgtaaagttgagcgagtgcaaccggaagtttgggatgta
ttagaagaagtcattaaagaacatccggtccttttaaaccgtgcgccaacgttacacaga
ctagggattcaagcatttgaaccgacattagtagaaggtcgtgcgattaagcttcaccca
ctcgtatgtactgcttataacgcagactttgacggtgaccaaatggcggtgcacgttcca
ttatctgcagaagcccaagcagagtctcgtttacttatgcttgcagctcaaaacatctta
aaccctaaagacggtaaaccagttgttacgccgtctcaagatatggtattaggaaactac
tacttaactcttgagcgtaaaggggcaattggagaaggtaacatttacaaagatgcagac
gaagcacttactgcgtatcgaaatggacatgtccaccttcatacgagagtggctatccct
gttggatctcttgggaaaacgaacttcaaggaagaacacgaaggtaaattactcctaact
tccgtagggaaaattatttttaatgaaattctcccaggatcgtttccatatgtaaatgaa
ccaactgcaacaaacttagagattgaaacacctgataaatacattgttccatctggcaca
gatgttaaaaaagaatacgaaaacagagatgttgtcgcaccatttaagaaaggtttctta
ggtgacattatcgctgaagtatttaagaaatttaaagtatctcaaacgtctgtcatgctt
gataagatgaaggatctaggtttccactactccacaaaagccggtattacaatcggtgta
tctgacattgttgtattgaaggataagcaagaaatccttgacgatgcagagaaaaaagtg
gaccgtgtcgtaaagcagttccgacgaggtttaattactgaagaggaacgttatgacaaa
gtcatcgaagtgtggagtgcagcaaaagacgagatccaaaatcgattaatgggaacactt
gaagatacgaacccaatctttatgatgagtgattccggagctcgtggtaacgcatcaaac
tttacgcaacttgctggtatgcgtggtctgatggcgaatccgtctggtcgtattattgaa
cttccaatcaaatcaagtttccgtgaaggtttaacagtacttgagtactttatctctacg
cacggtgcgcgtaaaggtctagccgatacagccttgaagactgccgattcaggttactta
acacgtcgtcttgtagatgttgcacaagatgtgatcgttcgtgaagatgactgcggtaca
gatcgtggactaaaggttgcggcaattactgaaggtacagaagtaattgaaccgttatac
gaccgccttgttggtcgtgtggcgtttaatacaattaagcatcctgagacaggtgaagta
ttagtagaaaaagatgttgaaatggatgaagattctgctaaagtcgtagaagatgcagga
gtagagtctgttgtcattcgttcggcatttacttgtgatactaaacatggcgtttgtaaa
agatgttatggtcgaaacttagcaacaggtgctgaagttgaggttggagaagcggttggt
atcattgctgctcaatcaattggtgaaccaggtactcagttaacaatgcgtacattccat
acaggtggggtagcaggagatgatattacccaaggtttaccgcgtatccaggaactgttt
gaagcacgtaacccgaaaggtcaggctgttatttcagagatcgaaggggcagttagcgac
attaaagaagtaaatgaaaagaaagaaattgtcgtacaaggtgaaattgaaacacgtaac
tacgttgcgccatacggtgctagaatgaaagtagaagttggcgatcaagtgaaaccaggt
caagaacttacagaaggttcaattgaccctaaagaattacttttagtttctggtgtacaa
ggtgtacaagaatatctcttacgcgaggtacaaaaagtttatcgtatgcaaggggtagaa
atcggagataaacacgtagaggttatggtacgtcaaatgcttcgaaagatccgtgttgtc
gatgctggagatacagaagtattaccaggatcccttgttgaagtgcatcaattcaatgaa
gcgaacaaagatattctattgcgtggaggtactccggcaatgggaactcctgtcttactc
ggtattacaaaagcatcccttgagacagattcattcttatctgctgcttctttccaagaa
acgacacgagttcttactgatgcagctatcaaaggtaagagagacgaacttgtcggcttg
aaagaaaacgtcattatcggtaaacttgttcctgcaggaacaggaatgcaacgatatcgc
aagatcacttcaacgaatgttgaagaggaagcgacagatgaaatggtagaagaagtatct
attcaagaataa
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