Bacillus shivajii: LGQ02_04265
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Entry
LGQ02_04265 CDS
T07881
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bshi
Bacillus shivajii
Pathway
bshi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bshi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGQ02_04265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bshi03019
]
LGQ02_04265
03009 Ribosome biogenesis [BR:
bshi03009
]
LGQ02_04265
Enzymes [BR:
bshi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LGQ02_04265
Messenger RNA biogenesis [BR:
bshi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LGQ02_04265
Ribosome biogenesis [BR:
bshi03009
]
Prokaryotic type
rRNA helicases
LGQ02_04265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GRP
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UCZ55236
LinkDB
All DBs
Position
885855..887312
Genome browser
AA seq
485 aa
AA seq
DB search
MGFTEATPIQEQVVPYGKEGKDIIGQAQTGTGKTAAFSIPLIENMEAEQKHPQGLVLTPT
RELAIQVSQEINKLGQFKGVRSLPIYGGQDIGKQIRGLKDRPQIIVATPGRFMDHMRRKT
IRPEFMKSVVLDEADEMLSMGFIEDIETILADVPAERNTMLFSATMPPRLKTIVQKFMND
PISIAIKAKEMTVENIEQRYIEVREKEKFDALCHLLDIDPPELAIVFGRTKRRVDELTES
LSIRGFAAEGLHGDMKQERRDQVIRKFKRGTIEILVATDVAARGLDVNNVSHVFNFDLPQ
DSESYVHRIGRTGRAGKSGIAFSFVTPKEKDHLNVIEKVTKKPMKRQGVPTFAEALAGRH
QQAVSQLEKALGQELDENLYGYAQTLMEDNDPVALVAAALKMVTKEPSKQTVKITGEAPV
RTKRKSGGGGFSRKRNDDRKGGKGGYRKGGGGGGRERDRNRKPRKERDSMKLRGGGGGKK
RSRQD
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggggtttacagaagcgaccccgattcaagaacaggttgtcccatatggaaaagaagga
aaagacattattggtcaagcgcaaactggaacaggtaaaacagcagcgtttagtattcct
ttaattgaaaatatggaagcagaacaaaagcatccacaaggtcttgtgttaacaccaacg
cgtgagttagccattcaagtttcacaagaaattaataagcttggtcaattcaaaggcgtt
cgttcactacctatttacggcggacaagatattggcaagcaaattcgtggtttaaaagac
cgtccacaaattatcgttgcaacaccaggacgttttatggaccatatgcgtcgtaaaacg
attcgtcctgaatttatgaaatccgttgttttagatgaagctgatgagatgctaagcatg
ggctttatcgaggacattgaaacgattttggcagacgttcctgctgaaagaaatacgatg
ctattttcagcgacgatgccaccacgattaaaaacaatcgtacaaaaattcatgaatgat
ccaatctctattgcaattaaagcaaaagaaatgacggttgaaaacattgaacaacgctac
atcgaagtgcgtgaaaaagaaaagtttgatgcgctatgtcatttattagacatagaccct
cctgagcttgcgatcgttttcggtcgtacgaaacgaagagtcgacgagttaacggaatcg
ttaagcattcgcggctttgcagcggaagggttacacggtgatatgaaacaagagcgtcgt
gaccaagtgattcgtaagtttaaacgaggaacgatcgaaattctcgttgcaacagatgtt
gctgcgcgtggacttgatgtaaataacgtgtctcacgtgtttaactttgacttaccgcaa
gactctgaaagctacgttcaccgtattggccgtacaggtcgtgccggaaaaagcgggatt
gcttttagctttgtgacaccaaaagaaaaagatcacttaaacgtgattgaaaaagttaca
aagaaaccgatgaaacgtcaaggcgtaccaacgtttgctgaagcacttgctggtcgtcat
caacaagcagtttctcaattagaaaaagcattaggccaagagcttgatgaaaacctttat
ggttatgctcagacactgatggaagacaatgaccctgttgcgcttgtagctgcagcatta
aaaatggtcacaaaagaaccgagtaaacagacagtgaaaattactggagaagcaccggtt
cgtacgaaaagaaagtctgggggaggcggattctcccgtaagcgtaatgatgaccgaaaa
ggtggtaaaggcggttatcgtaaaggtggcggcggcggtggtcgtgaacgtgatcgtaac
cgtaaaccacgtaaagaacgtgactcaatgaaacttcgtggtggcggaggcggaaagaaa
cgctctcgtcaagattaa
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