Bacillus shivajii: LGQ02_12360
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Entry
LGQ02_12360 CDS
T07881
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bshi
Bacillus shivajii
Pathway
bshi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bshi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGQ02_12360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bshi03019
]
LGQ02_12360
03009 Ribosome biogenesis [BR:
bshi03009
]
LGQ02_12360
Enzymes [BR:
bshi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LGQ02_12360
Messenger RNA biogenesis [BR:
bshi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LGQ02_12360
Ribosome biogenesis [BR:
bshi03009
]
Prokaryotic type
rRNA helicases
LGQ02_12360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF4503
Helicase_RecD
Flavi_DEAD
AAA_30
EELM2
Motif
Other DBs
NCBI-ProteinID:
UCZ51657
LinkDB
All DBs
Position
complement(2532185..2533765)
Genome browser
AA seq
526 aa
AA seq
DB search
MMKFEDFQISNEIKKAIKDMGFEAPSPIQERVIPEILKRVDVIGQAQTGTGKTAAFGIPL
IERVDQSKNIQSLILTPTRELAIQVAGELQKLSKYKKVQTLPIYGGQSIGHQIRALKRGV
QVVVGTPGRVLDHLNRGTLKLQNVHTLILDEADEMLDMGFIDDIEKILQQVNRERQTMLF
SATMPPPIRKLSNKYMKQPKQITISKGEVTAPSINQVYYKVLEKNKIDSLCRVIDSETID
LGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDSVMKKFRDSTIEFLIATDVAA
RGIDVDKVSHVINYDIPQDPESYVHRIGRTGRAGREGFALTLVTPREMKHLRSIEAEIKM
AIPSQGLPSVEEVVEKQQHTWKQQIIDLMEESETSSLYDELVTELLQDYPPEKVVSSLMK
LAFYSHTDLEDDGYDFGDTGAQKGMTRFFINVGRNVELTPKKIVEEVSQLVGISQKAIGR
IDIFDNFTFIEVPEEVAPFVYEGLKYSRLNGARINLEPAKPRPKRK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaattcgaagattttcaaatatcaaatgagataaaaaaagcaattaaagatatg
gggtttgaagcaccatctccaattcaagagcgtgtcattcctgaaattttaaaaagagta
gatgtcatcgggcaagctcaaacaggaacaggtaaaacagcagcttttggtattccatta
attgaacgtgtagatcagtcaaaaaatatccagtcgttaattttaactccaacaagagaa
ttagccattcaagttgctggagaactacaaaaattatctaaatataaaaaagtacaaacg
ctaccaatatacggtggacaatcaattggtcatcaaattcgtgcactaaagcgcggtgta
caagttgttgtaggaacacctgggcgtgtattagaccatttaaaccgagggacattaaag
ctacaaaatgtccatacactcattttagatgaagctgatgagatgctagatatgggtttt
attgatgatatcgaaaaaatccttcaacaagtaaatcgcgaacgtcaaacgatgctattt
tctgcaacgatgccaccgccaattcgaaagctgtcaaataaatatatgaaacaaccaaaa
caaattacgattagtaaaggtgaagtaacagccccatcaattaatcaagtttattacaaa
gtgttagaaaaaaataaaattgactcattatgccgtgtaattgatagcgagacgatcgac
ttaggaattattttctgccgtacgaaaaaaggtgtagcagaactaactgaggcccttcaa
gctcgtggatatatggctgatggtttacacggtgacttaacacaatcacaacgggacagt
gtgatgaaaaagtttcgagattcaacgattgaatttttaattgcaacagatgttgctgca
cgtgggatcgatgtagataaagtctcacacgtgatcaattatgatattccacaagaccct
gaaagctacgttcatcgtatcggtcgtacaggacgagcaggacgtgaaggatttgcatta
acacttgtaactccaagagaaatgaagcatttacgttcgattgaagcagaaattaagatg
gcaattccgtctcaaggtctaccatctgtagaagaagttgttgaaaaacaacagcatacg
tggaaacagcaaattattgatttaatggaggaaagtgaaacgagtagtttatatgatgag
ctcgtgaccgaactattacaagactaccctcctgaaaaagttgtttcctcgctgatgaaa
ttagcattttatagtcatactgacctcgaagatgatggttatgacttcggcgataccgga
gcacaaaaaggaatgacaagattctttattaatgtaggcagaaatgtcgaactaacaccg
aaaaaaattgtagaagaagtttctcagctagtcggtatttctcaaaaagcaattggaaga
attgatatctttgataactttacatttattgaagttcctgaagaggttgctccatttgtc
tatgaagggttaaaatattcgcgtttgaatggtgctagaattaaccttgaaccagctaag
cctagaccgaaaagaaaatag
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