Bacillus shivajii: LGQ02_15420
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Entry
LGQ02_15420 CDS
T07881
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bshi
Bacillus shivajii
Pathway
bshi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LGQ02_15420 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bshi03400
]
LGQ02_15420 (ligD)
Enzymes [BR:
bshi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LGQ02_15420 (ligD)
DNA repair and recombination proteins [BR:
bshi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LGQ02_15420 (ligD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Herpes_pp85
Motif
Other DBs
NCBI-ProteinID:
UCZ52224
LinkDB
All DBs
Position
3172691..3173659
Genome browser
AA seq
322 aa
AA seq
DB search
MNIKPIIPFEPIKQEEIPEGKHWVYQIKWDGVRILTYCDGSEVKLFNRNLNERTKQFPEV
VNIKNYANVKSIILDGEIIAFKEGRPSFSQVMKRDRLRSERSIQAKTATIPICYCIFDIL
YLNGDWLLDTPLNERQEILKKVIKPTNAIQLVKNYDDGEQLFTAVKEQQLEGMICKDVTS
SYELKGKDKRWLKIKNFHDIHAVIGGVTYRGNTVNSLLLGMYDKEQTFHYVGHAGTGKLS
QDDWTTITKLIETIKTDNMPFVHKPDRAKGAVWVKPQYVVKIQYIEWPKGQSIRQPSIQA
FIDKPAEGCLLPEDHSDKGRVK
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcaaacctatcatcccgtttgaaccaatcaagcaagaggaaattcccgaagga
aaacactgggtgtaccaaattaaatgggatggggttcgaatccttacctactgtgacgga
agcgaagtaaaattatttaaccgaaatttaaacgaacggacgaaacaatttcctgaagtg
gtaaatataaagaactatgcaaacgtaaagtccatcattttagatggggaaatcattgca
tttaaagaaggccgaccttctttttcacaagtcatgaaaagagatcgacttcgttcagag
cgaagtattcaagcgaaaacagcgacgatccccatttgttattgtatctttgatattctt
tatttaaatggtgattggttattagatacaccactgaacgaaagacaagaaatattaaaa
aaagttattaaaccaaccaatgcgatacaacttgtaaaaaactatgacgatggtgaacag
ctatttactgctgtaaaagagcaacaattagaaggaatgatatgtaaagatgtcaccagt
tcgtatgaattgaagggaaaggacaaacgttggttaaaaataaaaaacttccatgatatc
cacgctgtgatcggtggggttacttacagaggaaatacagtcaattcactccttttaggt
atgtatgacaaagagcaaacctttcattacgtcggccacgcaggaacaggcaaactatcc
caagacgattggacaacaattacgaagcttatcgaaacgattaaaaccgataacatgcca
tttgttcataaaccagacagggcaaaaggagcagtttgggtaaaaccacagtatgttgtc
aaaatccagtatattgaatggcccaaaggacaatctattcggcagccaagtattcaagct
ttcatcgataaaccggctgaaggttgcctcctcccagaagaccacagtgacaaaggaaga
gtcaaatga
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integrated database retrieval system
