Bacillus siamensis: CWD84_03615
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Entry
CWD84_03615 CDS
T06647
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bsia
Bacillus siamensis
Pathway
bsia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWD84_03615 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsia03019
]
CWD84_03615 (rnr)
03016 Transfer RNA biogenesis [BR:
bsia03016
]
CWD84_03615 (rnr)
Enzymes [BR:
bsia01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CWD84_03615 (rnr)
Messenger RNA biogenesis [BR:
bsia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CWD84_03615 (rnr)
Transfer RNA biogenesis [BR:
bsia03016
]
Prokaryotic type
tRNA degradation factors
CWD84_03615 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
TFIIE_beta
CSN8_PSD8_EIF3K
Motif
Other DBs
NCBI-ProteinID:
AUJ75977
UniProt:
A0AAI8HL14
LinkDB
All DBs
Position
694887..697220
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AA seq
777 aa
AA seq
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MEKEAFMDRLLAFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEETGQIVRTRS
NRYGLPEKMNLVKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERSIDRVVGTYTETKSFGFVIPDDKKITSDIFIPKHANNGAAEGHKV
VVKLTSYPEGRMNAEGEIVEILGHKNDPGIDILSIIHKHGLPGDFPAEAMEQATSTPDTI
DEKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQ
SVIKTTERMTYSDVNRILTEDDAELKERYEPLVPMFKDMERLAEILRAKRMDRGAVDFDF
KEAKVLVDEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSMKQAKYDP
HSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLINGQSDEATQEKWAERLPEIADHT
STMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVYRIGDEITVKVVDVNKDERNIDFEIVGMKGTRRPRETT
GDRRKRGRPARKRVLNSNTPASPPKSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcgtttatggaccgtcttctcgcgtttatgaaggaagaggcgtacaag
ccccttaccgttcaggaacttgaggagatgctgaacatcacggaagccgaagaatttaaa
gagctggtaaaagcgctggtggcgctcgaggagaccggacagatcgtccgcaccagaagc
aaccgctacgggcttccggaaaaaatgaatttagtaaaaggaaaaatttccgcgcatgca
aagggattcgcgtttctcttgccggaggatacctctttaagcgatgtgtttattccgccg
aatgagctgaatacagctatgaacggcgatatcgtcatggtgcggctcaattcccagtca
agcggatcgagacaggaaggcacggtcatccgcatcctggaaagaagcatcgaccgcgtt
gtgggcacatacacagaaacgaaaagcttcggctttgtcatcccggatgataagaaaatc
acgagtgatatttttattccgaaacatgccaataacggcgctgcggaaggccataaagtc
gtcgtcaaattgacaagctaccctgaaggcagaatgaacgccgaaggagaaatcgttgaa
atactcggccataaaaatgatccgggcatcgatattttatccatcatccataagcacggc
ctgccgggagattttccggctgaagcgatggagcaggcaacaagcacgccggataccatc
gatgaaaaagacatcaaagaccgccgtgatctccgcgatcaggtcattgtcaccattgac
ggggcggatgcgaaggatctggatgacgccgtcactgtaacaaagcttgataacggcagc
tacaagctcggcgtccatattgccgatgtcagccattacgtcacggagaattccccgatt
gataaagaagcgctggaaagagggacaagcgtgtacttggttgaccgggtcattccgatg
atcccgcacagactgtctaacggaatctgttctttaaatccgaaggtcgaccgcctgacg
ctttcctgcgaaatgacaatcaaccagcagggacaggtgacagagcacgagatcttccaa
agcgtcattaaaacgacggaaagaatgacctattcagatgtcaaccggattctcacagaa
gacgacgccgagctgaaagaaaggtatgagccgctcgtcccgatgttcaaagacatggaa
cgtctggcggaaattctccgggcgaaacggatggaccgcggcgccgtggattttgatttc
aaagaggcgaaggtgctcgtcgatgaggaaggcgccgtaaaagacgtcgtcatcagagag
cgctcagtagcggaaaagctgattgaagaattcatgcttgtggcaaacgaaacggttgcc
gagcacttccattggatgaacgtgccgtttatttaccggattcacgaagagccgaacgcc
gaaaaactgcaaaagttcctagagttcgtcaccacattcggttatatcgtcaaagggaaa
gccggagacattcatccgcgcgcgctgcaaagcattcttgacgaagtgcgggaccgtccg
gaagaaacggtgatttcaaccgtcatgctccgttccatgaagcaggcgaaatacgatccg
cacagcttgggccatttcgggctggcgactgaattttatacacacttcacatcgccgatc
cgccgttatcctgacttaatcgttcacaggctgatcagaacgtatttgatcaacggacaa
tcggacgaagcgactcaggaaaagtgggccgaacgccttccggaaatcgctgaccatacg
tcaacgatggaacggcgcgccgttgatgcagagcgggaaacggacgatctgaaaaaagcg
gaatatatgcttgataaaatcggcgaggaatttgacggcatgatcagttccgtcacgaac
ttcggaatgttcgtcgagctgccgaatacgattgaagggcttgtgcacgtcagctttatg
acggatgattattaccgttttgacgagcagcatttcgccatgatcggcgaacgcacgggc
aacgtttaccggatcggagacgaaatcacggtcaaagtcgtcgacgttaataaagacgag
agaaacatcgactttgaaattgtcggcatgaaaggcacccgccgtccgagagaaacaaca
ggcgaccgcagaaaacgaggcagaccggcgcggaaacgcgtgttaaacagcaataccccg
gcttcaccgccgaaatcggaggaaaaaggggaatggtttacaaaaccgaagaagaaaaag
aaaaaacgcggtttccaaaacgcgccgaaacaaaaacgcaaaaagaagaagtaa
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