Bacillus siamensis: CWD84_21285
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Entry
CWD84_21285 CDS
T06647
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bsia
Bacillus siamensis
Pathway
bsia03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bsia00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWD84_21285 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsia03021
]
CWD84_21285 (rpoC)
03400 DNA repair and recombination proteins [BR:
bsia03400
]
CWD84_21285 (rpoC)
Enzymes [BR:
bsia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWD84_21285 (rpoC)
Transcription machinery [BR:
bsia03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWD84_21285 (rpoC)
DNA repair and recombination proteins [BR:
bsia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWD84_21285 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AUJ79141
UniProt:
A0AAI8HRS2
LinkDB
All DBs
Position
complement(4139770..4143369)
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPANTPLEKKQLLSEKEYRAYLDKYGNKFQASMGAEAINKLLQ
DIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEAFRNSGNKPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMVFKNTDEALLAYQNGYVHLHTRVAVA
ANSLKNVTFTDEQRSKLLITTVGKLVFNEILPESFPYMNEPTKSNIEEKTPDRFFLDKGA
DVKAVIAEQPINAPFKKGILGKIIAEIFKRFHITETSKMLDRMKNLGFRYSTKAGITVGV
SDIVVLDDKQEILEEAQSKVDNVLKQFRRGLITEEERYERVISIWSSAKDVIQGKLMKSL
DEVNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGILAKPLKEGTEIIERLE
ERLIGRFARKQIKHPETGAVLINENELIDEDKALEIVEAGIEEVWIRSAFTCNTPHGVCK
RCYGRNLATGTDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQATISEIDGTIAEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKVAEGDQITR
GQVLTEGSIDPKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IDAGDTDVLPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMMNYRKVKPVSNVQPSEDMVPAE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtgaacaattttgagtatatgaacatcggtcttgcttcaccggataaaatc
cgttcatggtcttttggtgaagtgaaaaagcctgaaacgataaactatcgtacattgaaa
cctgaaaaggacggcctgttctgcgaacgcattttcggaccgactaaggactgggaatgt
cattgcggcaagtacaagcgggttcgttataaaggcgtagtttgtgaccgttgcggagtt
gaagtaacgcgggctaaagtccgtcgtgagagaatggggcatattgaactggctgccccg
gtttctcacatttggtatttcaaaggtattccgagccgtatgggtcttgtattggatatg
tcaccgcgtgcgttggaagaagtcatctattttgcttcttacgtcgtaactgacccggcc
aatacaccgctcgaaaagaaacagcttttatccgaaaaggaataccgtgcgtatctggat
aagtacggaaacaaattccaagcctctatgggtgcggaagccattaataaacttctgcag
gacatcgaccttgtcaaagaagttgatatgttaaaagaagagctgaaaacttctcaaggc
cagcgccgcacacgtgcgatcaaacgccttgaagtgcttgaagccttccgtaattcagga
aacaagccgtcttggatgattctcgatgtgcttccggttattccgcctgaattaagaccg
atggttcagcttgacggcggacgtttcgcaacatctgacctgaatgacctttaccgtcgt
gtcatcaaccgtaacaaccgtttgaaacgccttttggaccttggtgcgccaagcatcatc
gttcagaacgaaaaacgtatgcttcaagaggctgtcgatgctttaattgacaacggccgc
cgcggacgtcctgtaacaggccctggtaacagaccgttaaaatctctttctcacatgctg
aaagggaaacaaggacgtttccgtcaaaaccttcttggtaaacgtgtagactactcagga
cgttccgttatcgtcgtaggtccgcatctgaaaatgtatcagtgcggattgccgaaggaa
atggcgcttgagctcttcaagccattcgttatgaaagagcttgttgaaaaaggtcttgct
cacaacatcaagagcgcaaaacgcaaaatcgaacgcgtgcagccagaagtatgggatgta
cttgaatctgtcattaaggagcatccggtcttactgaaccgtgcccctacgcttcacaga
ttaggtatccaggctttcgaacctacgcttgttgaaggacgcgccatccgtcttcacccg
ttagtatgtacagcttataacgctgactttgacggtgaccaaatggcggttcacgtacct
ttatcagctgaggctcaagctgaagcccgcattctgatgcttgcggcccaaaacatcttg
aaccctaaagatggtaaaccggttgttacgccgtctcaggatatggtattaggaaactac
tacctgacacttgagcgcgccggagcagtcggcgagggtatggtcttcaaaaatacggat
gaagcgcttcttgcttatcaaaacggttatgtccaccttcatacgagagtagctgttgca
gcgaactccctgaagaatgtgacatttacggatgagcagcgttcaaaactgttaattaca
acagtcggtaagttggtcttcaatgaaattcttcctgagtcattcccttacatgaatgaa
cctacgaagagcaacattgaagagaaaacgcctgaccgtttcttcttagataaaggtgct
gacgtaaaagctgtgattgcagagcagccgatcaacgcaccgtttaaaaaaggtattttg
ggtaaaatcatcgcggaaatctttaaacgattccatatcacggaaacgtctaagatgctt
gaccgcatgaaaaacctcggtttcagatattcaacgaaagccggtatcacggtaggggtt
tctgatatcgtcgttctcgatgataagcaggaaatcctcgaagaagcacaaagcaaagtt
gataatgtcttgaaacagttcagacgcggtttaatcaccgaagaagaacgatatgaaaga
gtcatttcaatttggagttcagcgaaagatgttatccaaggcaaactgatgaaatcatta
gacgaagtcaacccgatctacatgatgagtgactcaggagcccgtggtaacgcatctaac
tttacgcagcttgcgggtatgcgcggtctgatggccaacccggctggacgaatcattgaa
ttgcctatcaaatcaagtttccgtgaaggtctgacggtattggagtactttatctccact
cacggtgcgcgtaaaggtcttgccgataccgccctgaaaacagctgactcaggttacctt
acacgccgtcttgttgatgttgcgcaggatgttatcattcgtgaaacagattgcggaact
gaccgcggtattcttgcaaaaccgcttaaagagggcacggaaatcatcgagcgtctggaa
gagcgtctgatcggacgtttcgccagaaaacagatcaaacatcctgagacgggtgctgtg
ctcattaacgaaaacgaattgatcgatgaagataaagcgctggaaatcgttgaagccgga
atcgaagaagtgtggatccgttccgcgttcacatgtaacactcctcatggtgtatgtaaa
cgatgctatggacgaaaccttgcaaccggaactgatgttgaagtcggcgaagcagtaggt
attatcgctgcccaatctatcggtgagcctggaacacagttaacaatgcgtacgttccac
acaggcggggttgccggagacgatatcacacaaggtcttccgcgtatccaagagcttttc
gaagcgcgtaatcctaaaggtcaagcgacaatttctgagattgacggtacaattgccgaa
atcaatgaagtccgcgacaaacagcaggaaattgttgttcaaggcgctgttgagacacgt
tcatacacagcaccttacaactcacgcctgaaagtggctgagggagatcagattacccgc
ggtcaagtgctgacagaaggttctatcgatccgaaagaacttcttaaagtcactgacctg
acaacggttcaagaatatcttctgcatgaggttcagaaggtttaccgtatgcagggggtt
gaaatcggcgataaacacgtagaagtaatggttcgccagatgcttcgcaaagtccgtgtg
atcgatgccggagatactgatgttcttcctggcacattgcttgatattcaccaattcaca
gaagcgaacaaaaaagtgctgcttgaaggcaaccggcctgctacagggcgtcctgtcctt
ctcggtatcacgaaagcttcactcgagacagattcattcttgtctgccgcatcattccaa
gaaacaacacgtgttcttacggatgctgcgattaaaggcaagcgcgatgagcttctcggc
ctgaaagaaaatgttatcatcggtaaactggttccggccggtaccggtatgatgaattac
agaaaagtaaaacctgtttcaaacgttcagccttcggaagatatggttccggctgaataa
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integrated database retrieval system
