Bacillus siamensis: CWD84_21640
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Entry
CWD84_21640 CDS
T06647
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsia
Bacillus siamensis
Pathway
bsia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CWD84_21640 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsia03400
]
CWD84_21640 (mfd)
Enzymes [BR:
bsia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CWD84_21640 (mfd)
DNA repair and recombination proteins [BR:
bsia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CWD84_21640 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AUJ79193
UniProt:
A0AAI8HSA0
LinkDB
All DBs
Position
complement(4204957..4208490)
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKKPIFFITHNL
YQAQKVTEDLTALLGDQSVFLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPVVVA
PVAALRRMLPPKELWKSSQITISLGDDIEQDQLSARLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSEHPVRIELFDTEVDSIRSFNSDDQRSIETLKTVAIGPAKELIIRAEEKARAM
ERLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVKYLSYFYEKPASLLDY
TPSDTLLLLDEVSRIHEMEDQLQKEEAEFMTSLLEEGKILHDINLSFSFQEIMAEKRRPA
IYFSLFLRHVQHTSPQNIVNVTSRQMQSFHGQMNVLASEMERFKKSNFTVVFLGANKDRT
DRLASVLADYEIEAAKTDSSKALVQGQVYVMEGELQSGFELPLMKLAVITEEELFKNRIK
KKPRKQKLTNAERIKSYSELQVGDYVVHVNHGIGKYLGIETLEIKGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVENSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETDDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHYETITERFQDYPINIGLLSRFRTRKESNETLK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTPKSEQFE
TEIDIELDAYIPENYIQDGKQKIDMYKRFRSIATIEEKNELQDEIIDRFGSYPKEVEWLF
TVAEMKVYGKYERVELIKQDKDAVRFTILEEASAQIDGQKLFELGNKYGRQIGLGMEGKK
LKISVQTKGRKTEEWLETVLGMLKGLQDVKKETIASS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaatattcaaacctttattaaagaaagcgatgattttaaatccattgttaacggt
ttacatgaggggctgaaggaacagctgcttgcgggtctgtcaggttccgcgcgttctgtt
tttacctccgcccttgcacaggaaacgaaaaagccgattttctttatcactcataattta
tatcaggcccaaaaagtgacggaagatctgacggcgcttctcggggatcaatctgttttt
ttataccccgtaaatgaattgatttcttcagaaattgcggtggcgagtcctgaactgcgc
gctcagcggcttgatgtcattaatagattaacaaacggagaagcgcctgtcgtagtggcg
cccgttgcagcactgagaagaatgcttccgccgaaagaactgtggaaaagcagccaaatc
accatatcactcggagacgatatagaacaggatcagctgtctgcacgccttgtagaggtg
gggtatgagcgttccgatatggtttctgcacccggtgaattcagtattcgcggcggaata
atcgacatttatccgctgacgtcagaacatccggtgcggattgagctgtttgatacggag
gtcgactccatcagaagcttcaactctgatgaccagagatcaattgagacgctaaaaacg
gtggccatcggaccggcgaaggaactgatcatccgggcggaagaaaaagcccgcgcgatg
gaaaggctcgataaagggcttgccgacagtctgaagaagctgaagcaggacaaacaaaag
gaaatgcttcatatcaatatctcacatgataaagaacggttatcaacgggacagactgat
caggaacttgtgaagtatctctcgtacttttacgaaaagcctgctagtttgctagattat
acaccgtcagacaccttgttattgttagacgaggtcagccggattcatgaaatggaggat
cagctccaaaaagaagaagccgaattcatgacaagtctgctggaagaaggaaaaattctg
catgacatcaatttatccttcagctttcaggagattatggccgagaagcggcgtcctgcc
atttacttttcattatttttgcgtcatgttcagcatacaagccctcaaaatatcgtgaat
gtgacaagccggcagatgcagagttttcacgggcagatgaatgtgctcgccagtgaaatg
gagcgctttaagaaatcaaacttcaccgtcgtctttttaggcgcaaataaggacagaacc
gacagattggcgtccgtgctggctgattacgaaattgaagccgccaaaacggacagctcc
aaagcgcttgtacaaggacaggtctatgtcatggaaggcgagctgcaatccggttttgaa
ctgccgctgatgaagctggccgtcattacggaggaagagctgttcaaaaaccgaatcaag
aagaagccgagaaagcagaagctgacaaatgccgaacggatcaaaagctactctgagctt
caagtcggtgactatgtcgtccacgtcaaccacgggatcgggaagtatttggggatcgaa
acacttgaaatcaagggcattcataaagattacctcaatattcattaccagggcagtgat
aagctgtatgtcccggtagaacaaatcgaccaggtgcagaagtacgtcggctctgaagga
aaagaaccgaagctttataaactgggcggcagtgaatggaaacgggtaaagaaaaaagtt
gaaaactccgttcaggatattgccgatgatctgattaagctttatgcggaacgcgaagca
agcaaaggctatgcgttctcgccggatcatgaaatgcagcgtcagttcgagtctgctttc
ccttatcaggaaacagatgatcagctccgatccattcaggaaattaaaaaggacatggaa
agagaacgcccgatggaccgtttgctttgcggtgatgttggttacgggaagacggaggta
gccatccgtgcggcctttaaagcgatcgccgacggaaaacaggtcgcgctccttgtaccg
acgaccatactcgcacagcagcattatgaaaccattacggagcgtttccaagactatccg
attaacatcggtcttctcagccgattcagaacgagaaaagaatctaatgaaacgctcaaa
ggtctgaaaaacggaacagtagatatcgtgatcggaacccacaggctcttatctaaagat
gtcgtctataaagatctcggcttgctcatcatcgacgaggagcagcgcttcggcgttacg
cataaggaaaaaatcaaacagatcaaagccaatgtcgatgtgctgactctgacggcgacg
ccgattccgcgtacgcttcatatgtccatgctcggtgtgcgggacttatctgttattgaa
acgccgccggaaaaccgtttccctgtccagacatatgtcgtggaatacaacggcgcgctt
gtacgagaagccatcgaaagagaactggcgcgcggaggacaggtgtatttcttgtacaac
cgcgtggatgatatcgagcggaaggctgacgaaatttccatgcttgttcccgatgcgaaa
gtggcatacgcccacggaaaaatgaccgaaaatgaattggaaagcgtcatgcttaatttt
ctggaaggggaatcagatgtcctcgtcagcacgaccattattgagacaggcgtagatata
ccgaacgtcaataccttgattgtgtttgacggagacaaaatggggctgtctcagctgtat
cagctgagaggacgggtcggccgctccaaccgtgtcgcgtacgcgtattttacgtaccgc
agagacaaagtgcttactgaggtggcggaaaaacggctgcaggcgattaaagaatttacc
gagctgggatcagggtttaaaattgccatgcgtgacttgacgatcaggggagcggggaac
cttctcggcgcccagcagcacggtttcatcgactcggtcggttttgacctgtactcgcaa
atgctcaaagaagccattgaagagcgtaaaggcgatacgccgaaaagcgaacagtttgag
acagaaatcgatatcgagcttgatgcatatattcctgaaaactatatacaagacggcaag
caaaaaatcgacatgtataaacgcttcagatcaatcgctacaattgaggaaaaaaatgag
cttcaagatgaaatcatcgacaggttcggcagttaccctaaagaggttgaatggctgttt
acagttgctgagatgaaggtgtacggcaaatatgaacgcgtcgaactcatcaagcaggat
aaggacgcggtcagattcactattttggaagaggccagcgcccagattgacggccagaaa
ttgtttgaactcggcaataaatacggccggcagatcggactgggaatggaagggaaaaaa
ctgaaaatttcagtgcagacgaaaggccgcaaaaccgaagagtggctggagaccgtactc
ggcatgctaaaaggccttcaagatgtgaagaaagaaacaatcgcgtcctcataa
DBGET
integrated database retrieval system
