Peribacillus simplex: UP17_23430
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Entry
UP17_23430 CDS
T04304
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bsj
Peribacillus simplex
Pathway
bsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UP17_23430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsj03019
]
UP17_23430
03016 Transfer RNA biogenesis [BR:
bsj03016
]
UP17_23430
Enzymes [BR:
bsj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
UP17_23430
Messenger RNA biogenesis [BR:
bsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UP17_23430
Transfer RNA biogenesis [BR:
bsj03016
]
Prokaryotic type
tRNA degradation factors
UP17_23430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_HELZ2
S1_RRP5
OB_Dis3
CSD
WHD_GPIID
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AMM95039
LinkDB
All DBs
Position
complement(4989454..4991823)
Genome browser
AA seq
789 aa
AA seq
DB search
MEDNIQEHINKLLTYMTDEAYKPLTVQELEEALKIEDSADFKNFVKALVKMEEKGLVVRT
RSNRYGLPQKMNLFRGKLTGHAKGFAFVTPEDNPGMDDIFIPPNETGTAMHGDVVMVRVS
SETSGSRQEGTVIRILERGITQVVGTYSESKSFGFVIPDDKKIANDIFIPQHASHGAVEG
HKVVVKLTSYPEGRVSAEGEVIEILGHKNDPGVDILSVIHKYGLPMEFPDDVMEQANAVS
DTIQESEIGSRRDLRNDVLVTIDGADAKDLDDAVTVSKLENGNYKLGVHIADVSHYVTEG
SPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRFTLSCEMEITPNGEVVNHE
IFESVIKTTERMTYGNVNKILVDKDEEQLERYEALVPMFQDMEKLAAILRKNRMNRGAID
FDFNEARVIVDEEGHPTDVVLRERSVAEKLIEEFMLAANETVAEHFNRLDVPFIYRIHED
PKPEKLQRFFEFITNFGYIVRGSANDVHPKALQEIIEAVAGKPEETVISTVMLRSMQQAK
YDPESLGHFGLSAEFYTHFTSPIRRYPDLIVHRLIRTYLVEGKLDEATKEKWNAILPEIA
DHTSKRERRSVDAERETDDLKKAEYMLDKIGEEYTGIIGSVTNFGMFVELPNTIEGLVHV
SFMTDDYYRFDERQLAMIGERTGNVFRIGDEIDVRVSNVNKEERAIDFEIIGMKVSRPRP
SGEKKIFKANSGERKRGRGGNGGRNEGKGGGRGGSRNGDSPSSERKPKKKKKFFENAPAA
KRKRKPKKR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggaagataacattcaagaacatattaataagctgctgacgtacatgacggatgaagca
tataagccgttaaccgtacaagaactggaagaggctttgaaaatcgaagactcggcagat
ttcaagaatttcgttaaggctttagttaagatggaagaaaagggattggtggtcagaacg
agaagcaatcgttacggcctgccgcaaaaaatgaatttgttccgcggtaaattaacggga
catgcaaagggattcgcttttgttacacctgaagataacccaggtatggatgatattttc
attccgccaaatgaaacgggtacagcgatgcatggagatgtcgtcatggtacgagtatct
tcggaaacatccggctcaagacaagaaggcacggtgatcagaatacttgaacgcggaatt
acacaagtggtcggtacatactcggaaagtaaaagttttggtttcgtcatccctgatgat
aaaaagattgcaaacgatatcttcattccacagcatgcttcccatggagcggtagaggga
cataaagttgtcgtcaagctgacttcttatcctgaaggacgtgtaagtgcagaaggcgaa
gtcattgagattcttgggcataagaatgaccctggtgtagatattctttcagtgatccat
aaatatggtttgccgatggagttcccggatgacgtcatggagcaagccaatgccgtttcg
gataccattcaagaaagtgaaattggcagtcgcagggatttgcggaatgatgttttggtc
acgattgatggagcggatgcaaaggacctggatgatgccgtcactgtttctaaacttgaa
aatggcaattataagcttggtgtccatattgctgatgtcagccattatgtgacggagggt
tcgccaatcgataaggaagccttagaaagagggacgagcgtttatttggttgacagggtc
atcccgatgatcccgcatcgtttatcgaatggcatttgttccttgaacccacaagtcgac
cgttttacactttcttgtgaaatggaaatcacgccaaatggtgaagttgtcaaccatgag
attttcgaaagtgtcattaagacgactgaacgtatgacatatggcaatgtgaacaaaatc
cttgtggataaggatgaagaacaactcgaacgctatgaggctttggttccgatgttccag
gacatggagaagttggcggccatccttcgtaaaaatcggatgaaccgcggtgcaatcgac
tttgatttcaatgaagcgagagttatcgttgatgaagagggacatccgactgatgtggtt
ttacgtgaaaggtcggttgcggaaaagctgattgaagagttcatgcttgcggccaacgaa
accgttgctgagcatttcaaccgtcttgacgttccgttcatttaccgtattcatgaagat
cccaagccggaaaaactgcagcgtttctttgaattcattacgaacttcggatatattgta
cgggggtcggccaatgacgttcatcctaaagcgttacaggaaatcattgaggcggttgca
ggtaaaccggaagaaacggtcatatccaccgtcatgcttcgttccatgcaacaagccaaa
tatgacccggagagcttaggtcactttggtttatcagctgagttttatacacatttcaca
tcaccgattcgccgttacccggatttgatcgtgcacaggttgatcaggacctacttggtg
gaaggtaaactcgatgaagctacgaaggagaaatggaatgccattttacctgaaattgcc
gatcatacatcgaaacgtgaacgtcgctcagtcgatgctgaacgggaaacggatgatttg
aagaaagcagaatatatgcttgataaaatcggcgaagaatataccggtatcattggttct
gttacgaatttcgggatgttcgtcgagttgccgaacaccattgaaggacttgtccatgtc
agctttatgacggatgattattaccgcttcgatgagcgtcagcttgcaatgatcggggaa
cgtaccggtaatgtgttccggattggcgatgagatcgacgtacgtgtttccaacgtcaat
aaagaggaacgcgccatcgattttgaaattatcggcatgaaggtaagccgcccgcgtcca
tctggcgagaagaaaatattcaaagccaactcaggtgaacgcaaacgtggccgcggtggc
aatgggggacgtaacgaaggtaaaggcggcggccgcggaggcagccgtaatggagattcg
ccttcctccgagagaaaaccgaaaaagaagaaaaaattctttgaaaatgcgccagctgcc
aagcgcaagagaaaaccaaaaaagagataa
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