Bacillus smithii: BSM4216_2683
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Entry
BSM4216_2683 CDS
T03984
Name
(GenBank) RecD-like DNA helicase YrrC
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bsm
Bacillus smithii
Pathway
bsm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BSM4216_2683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsm03400
]
BSM4216_2683
Enzymes [BR:
bsm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BSM4216_2683
DNA repair and recombination proteins [BR:
bsm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BSM4216_2683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
AAA_22
AAA_16
NTPase_1
AAA
UvrD-helicase
HTH_IclR
AAA_28
AAA_12
nSTAND3
T2SSE
NPHP3_N
HHH
TsaE
AAA_17
Mg_chelatase
AAA_29
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AKP47918
LinkDB
All DBs
Position
1:complement(2330298..2332703)
Genome browser
AA seq
801 aa
AA seq
DB search
MMEGQHNIGLFAEQETYVKGRHIATIFRNEQNLYTVIRVKVEETNDQYEEKEAVITGYFP
QVHEHETYTFYGFFQEHPKFGIQFQCKHFQKEVPQTRQGVINYLSSELFKGIGRKTAERI
VDHLGEDAISKILKSPSVLDGVPNLSSEKAKALYDVLKENEGLEQIMVALNQYGFGPQMS
MKIYQTYKEQTLDIIQKNPYQLVEDVEGIGFSRADELGKQLGMDETHPERLKAACLYTLE
SECLQEGHVYLDQKDLLSKGKALLDKNSSTPIAETDISEQLHQLKKEKKLIEEEDRIYIP
SLYFAEKGIVSNIQRILAQDQYEEQFPESEFLLALGKLEERIGVQYASSQKKAIQTALLS
PMLLLTGGPGTGKTTVIKGIVELYAELHGLSLDPKDYSKDDPFPIVLGAPTGRAAKRMAE
STGLPAATIHRLLGWNGQAGIDFEQDRTINGKLVIIDEMSMVDTWLAYQFFNALPEEVQV
VLVGDEDQLPSVGPGQVLKDLLDSKTIPTVQLTDIYRQENGSSIIELAHEIKKGKLPADL
AVQKKDRSFIKCSTQQIASVVEQVVENARNKGFTAKDIQVLAPMYKGPAGIDRLNKMLQE
ILNPNHDQSRKELAFGDTVYRIGDKVLQLVNKPEKNVFNGDIGEVISIFYAKENTEKQDM
VLVSFEGNEVTYTRQELNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRKNLLYTAV
TRSKKFLILCGEEEAFRWGVERNDSLLRKTTLCQKLSEVLANKDADSKEENSISYPMSEE
EWMQINPMIGMENVTPYDFME
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagggcagcacaatatcggcctgtttgcagaacaggaaacatatgtgaaaggc
cgccatatcgcgaccatctttcgcaatgaacaaaatctttataccgtcataagggtaaaa
gtggaagaaacaaatgaccaatatgaagaaaaagaagcggtcattactggttattttccg
caagtacacgaacatgaaacatacaccttttatggcttttttcaagagcatccaaaattc
ggaattcaatttcaatgcaaacattttcaaaaagaagttcctcagacaaggcaaggagtg
atcaattatttatcgagcgaattgttcaagggaatcgggcgaaaaacggcggaaagaatt
gtcgatcatttaggcgaagatgccatttccaaaatattgaaatccccttccgtgcttgat
ggtgttccgaatctatcctcagaaaaagcgaaagctctttacgatgttttaaaggaaaat
gaagggctcgaacaaatcatggtcgccttaaatcaatacggattcggtccgcaaatgtcc
atgaaaatttaccagacctataaagaacaaacgttggatattatccaaaaaaatccttat
cagcttgtggaggacgtggaagggatcggattttcgcgcgctgatgaattaggaaaacag
cttggaatggatgagacacacccagaacgtttgaaagcagcctgtttgtatacgctggaa
tcggaatgtctgcaagaaggtcatgtctatttggatcaaaaggacttgctttcaaaagga
aaagctctcttggataaaaacagcagcactccaatcgctgagactgacatatccgaacag
cttcatcaattgaaaaaagagaagaagctgattgaagaagaggacagaatttatattccg
tctctctatttcgctgaaaaagggattgtttccaatattcagcgcatcttagcccaagat
caatacgaggaacaatttcctgaatcagaatttttattagccttgggaaaattagaagaa
agaattggcgtacagtatgcttcctctcagaaaaaagcgatccaaacggctttattatcg
ccgatgctgctgctgacgggcggccccggaacgggaaaaaccacagtaatcaaaggaatt
gtcgaattatacgcagagctgcacggtctatctttggatccgaaagattatagtaaagac
gacccttttccaatcgtcttaggagcgcctacgggaagagctgcaaaaaggatggcggaa
tcaacgggcctgccggcagcaacgatccaccgattgcttggctggaacggacaagccgga
atcgattttgaacaagaccggaccattaacggaaaattagtgatcattgatgaaatgtcc
atggtggatacatggctggcttatcaattttttaatgcgctgccggaggaagttcaagtc
gtgctggtaggggacgaagatcagctgccatctgtcggcccgggacaagtgttaaaagac
ttgctggactcgaaaacgataccgactgtacagcttacggatatttatcggcaagaaaac
ggatcttccatcattgaattagctcatgaaatcaaaaagggaaaactgcctgctgaccta
gctgttcaaaaaaaagatcgctcgtttattaaatgttccacacaacaaattgccagcgtt
gttgagcaagtggtggaaaatgctcgcaacaaaggatttacggcaaaagatattcaagtt
ttggctccaatgtataaagggcctgccgggattgaccgtttaaataaaatgctgcaggaa
attttaaatccaaatcatgatcaatctcgaaaagaattggctttcggggatacagtctac
cgtattggagataaagtgcttcagcttgtcaacaaaccggaaaaaaatgtatttaacggc
gatatcggtgaggtcatttccattttttacgcgaaagaaaacacggaaaaacaagacatg
gtccttgtttcttttgaaggaaatgaagtcacctatacacgccaagaattgaatcagatc
actcatgcttattgctgttccatccacaaatcacaaggaagcgaatttcctatcgtgatt
ttgcctgttgtgaaaagctattatcgcatgctgcgaaaaaatttattatatactgccgtg
accagaagcaaaaaatttttaattttatgcggcgaagaagaagcgtttcgttggggcgtt
gaacgtaacgatagtttgttgagaaaaacaactctttgccaaaaactgtcagaagtgttg
gctaataaagatgctgacagcaaggaagaaaattccatttcctatccgatgagtgaagaa
gagtggatgcaaatcaatcctatgataggaatggaaaacgttaccccttatgattttatg
gagtaa
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