Bacillus smithii: BSM4216_2844
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Entry
BSM4216_2844 CDS
T03984
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bsm
Bacillus smithii
Pathway
bsm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BSM4216_2844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsm03400
]
BSM4216_2844
Enzymes [BR:
bsm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BSM4216_2844
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BSM4216_2844
DNA repair and recombination proteins [BR:
bsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BSM4216_2844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
zinc-ribbons_6
Motif
Other DBs
NCBI-ProteinID:
AKP48078
UniProt:
A0A0H4P6J3
LinkDB
All DBs
Position
1:complement(2484704..2485522)
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AA seq
272 aa
AA seq
DB search
MPEMPEVEIVRRTLLPLTTRKTIKDVTIRWPKMIQNTDADTFRKTLNGQTIHDISRRGKF
LIFHFDDYSVVSHLRMEGRYRVEEKIEPDPHTHLVFHFTDGTHLLYRDVRKFGTFHLFPK
GEEFFAPPLSHLGLEPFSDAFTFAFLKEQLKKTSRLIKAVLLDQKVVVGLGNIYVDEVLF
RSGIHPERKAQDLNDKEIEKLRAEIITTLKEAIDKGGSTVRSYVNSQGKKGTYQLQLFVY
ARNGEPCRICGRPIEKIKVAGRGTHFCSNCQH
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgaaatgccggaagtagaaatcgttcggcgaacattgcttcctttaaccacgagg
aaaacgataaaagacgtgacgatccgttggccgaaaatgattcaaaatacagacgcagac
acttttcgaaaaacgttgaacggacagacgatccatgatatatccagacgagggaaattc
ttgattttccattttgatgactattctgttgtatcgcatttgcggatggaaggtcgctat
cgtgtggaagaaaagatagagccggatcctcatacccatttagtgttccactttactgac
ggtacgcatctgttgtacagagatgtacggaaatttggaacgtttcatttgtttccaaag
ggagaagaattttttgctcctcctttatcgcacttaggtctggagcctttttctgatgca
ttcacattcgcctttttaaaagaacaactgaaaaaaaccagcagattgattaaagctgtt
ctgctggatcaaaaagtagtggttggactcggcaatatttatgtcgatgaagtgttgttt
cgttccgggattcatccggagcggaaagcacaggatttgaatgataaggaaatagaaaag
ctaagagcggagatcatcactacgttgaaagaggccatcgataaaggcggaagcacggtc
cgctcgtatgtgaattcacaaggaaagaaagggacgtaccagctgcaactgttcgtgtat
gcgagaaacggggagccttgccggatctgtgggcgtcctatcgaaaaaataaaagtcgct
ggccgcggcacacatttttgctcaaactgtcagcattga
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