Bacillus subtilis BSn5: BSn5_20460
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Entry
BSn5_20460 CDS
T01417
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bsn
Bacillus subtilis BSn5
Pathway
bsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSn5_20460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsn03019
]
BSn5_20460
03016 Transfer RNA biogenesis [BR:
bsn03016
]
BSn5_20460
Enzymes [BR:
bsn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BSn5_20460
Messenger RNA biogenesis [BR:
bsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BSn5_20460
Transfer RNA biogenesis [BR:
bsn03016
]
Prokaryotic type
tRNA degradation factors
BSn5_20460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
SPATA25
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ADV96696
LinkDB
All DBs
Position
3949872..3951989
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AA seq
705 aa
AA seq
DB search
MGQEKHVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSV
DQNCSSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVA
GTKDAINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDE
ELNEKVKALAEEDLLKAIQVHEKHAREDAINEVKNAVVAKFEDEEHDEDTIKQVKQILSK
LVKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGAL
GDVQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEK
DFPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLT
DIQGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLA
TLSESRKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISS
TDESGNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERV
GKVEDVVKIGDEILVKVTEIDKQGRVNLSRKAVLREEKEKEEQQS
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagaaaaacatgtctttaccatagattgggccggaagaacgcttactgttgaa
accggccagcttgccaaacaggcaaatggtgctgtgatgatccgctacggtgatacagca
gtacttagtacagcaaccgcttcaaaagaacctaaaccgcttgatttcttccctcttact
gtaaactatgaagaaagattatatgcggtagggaaaattccgggcggatttattaaaaga
gaaggacgtccaagtgaaaaagcggttcttgccagccgtttaattgaccgtccgatccgt
cctttgtttgccgatggattccgtaatgaagttcaagtcatcagcattgtcatgagtgtt
gaccaaaactgctcttcagaaatggctgccatgttcggttcatctcttgcactttctgta
tcggatattccgtttgaaggaccgattgcaggggttactgtcggacgcattgatgatcaa
tttatcattaacccgacagtcgatcagcttgaaaaaagcgatatcaatcttgtcgttgcc
ggcacgaaagatgcgattaacatggtagaagcgggagcggacgaagttcctgaggaaatc
atgcttgaggccattatgttcggccatgaagagattaaacgcctgattgcattccaagaa
gaaattgttgcagcagtcggcaaagagaaatctgaaattaagctctttgaaattgatgaa
gagcttaatgaaaaagtaaaagctttggcagaagaggatctgctgaaagccatccaagtt
catgaaaagcatgcccgtgaagatgccattaacgaagtgaagaacgcagttgtggcaaaa
ttcgaggatgaagaacatgatgaagacacaatcaagcaagtgaagcagattttatccaag
ctggtgaaaaatgaagttcgccgcctgattactgaagagaaagtaagaccggatggccgc
ggtgtcgatcaaatccgcccgctatcttcagaggttggcctcttgccaagaacgcacggt
tcaggtctatttacaaggggacaaactcaggccctcagcgtatgtacgctaggtgctctg
ggagatgtgcaaatccttgacggcttaggtgtcgaagagtcgaaacggtttatgcatcat
tacaacttcccgcaattcagcgttggggaaacaggaccgatgcgcggaccgggacgtcgt
gaaatcggacacggagcactgggtgagcgtgcgcttgagccagttattccgtctgaaaaa
gacttcccttatactgtccgtcttgtttcagaagtgcttgaatcaaacggttctacatct
caagcaagcatttgcgcaagcacacttgcaatgatggatgctggtgtaccgattaaagcg
ccagttgctggtattgcgatgggtcttgtcaaatcaggcgaacattacactgtcttgact
gacatccaaggcatggaagatgcgctcggagatatggactttaaagtagcgggaactgaa
aaaggcgtaacggccctgcaaatggacattaaaattgaaggcctttccagagagattctt
gaagaagcgcttcagcaggcgaaaaagggcagaatggaaatcctcaacagcatgcttgca
acattaagcgaatcaagaaaagagctttctcgatatgcgcctaagatcttaacaatgacc
attaatcctgataaaatccgcgatgtcatcggaccaagcggaaaacaaatcaataagatc
atcgaagaaaccggtgttaaaattgatattgagcaggacggcacaatctttatttcctct
acagatgaaagcggcaaccaaaaagcgaaaaaaatcatcgaagaccttgttagagaggtt
gaagtcggccaactttacctaggtaaagtgaaacggattgaaaaattcggggctttcgtt
gaaattttcagcggaaaagacggtttggtgcacatttcagagcttgcgcttgaacgagta
gggaaagttgaagatgttgtaaaaatcggagacgagattcttgtcaaagtcactgaaatt
gataaacaaggacgagtgaatttatcccgcaaagcggtgctccgtgaagagaaagaaaaa
gaagaacaacaatcttaa
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