KEGG   Baekduia soli: FSW04_16100
Entry
FSW04_16100       CDS       T06127                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
bsol  Baekduia soli
Pathway
bsol03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bsol00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FSW04_16100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bsol03019]
    FSW04_16100
Messenger RNA biogenesis [BR:bsol03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FSW04_16100
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: QEC48944
UniProt: A0A5B8U781
LinkDB
Position
3386455..3388119
AA seq 554 aa
MAKSKLRVLPLGGLGEIGKNMTVVEYDGSIVVVDTGLRFPTAEQVGIDLVLPDFTYLRER
ADDIEGIVITHGHEDHLGALPWILRELGTDIPVYGGPLTMAMARSKLDEHRLKDTDLTDV
RPGETLELGAFDIELIHLTHSIPDMMAVALTCDVGTMLITGDYKFDQTPVDGKPADVSRL
AELGREGLLLLCGDSTNADRPGFSPSESVAGPNLEAVFGRCEGRIVVTCFASNIHRVQQV
VDAAKVHGRRVVLVGRSMRKNINIGRMLGHIDVEDGTFVQPREARDFPDHKLVIVSTGSQ
GEPLSALRRMAHRDHPQVELHKGDTVVFAATSIPGNERAVNDTIDRLYHIGCDVITARDA
PIHASGHGYQEEIKLMLNLTRPKYVMPFHGDYKRIHLHGQLAESVGVPAENVFKGENGLP
LELDGDGAAFGSRERAGMIYVDGVDIGDPTDVALRDRRMLSADGIFVVVATISEQDGSSV
ADPEIIFRGVPYPEDAEGLLGDIRGAITQSLEKAAREEIREVDLLQQVLHDDLAKFVYDR
LRRRPMVLPVVVEV
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggccaagagcaagctgcgagtcctcccgctgggtggactgggcgagatcggcaagaac
atgaccgtcgtcgagtacgacggctcgatcgtcgtcgtcgacaccggactgcggtttccc
accgccgagcaggtgggcatcgacctcgtgctgcccgacttcacgtacctgcgcgagcgg
gccgacgacatcgagggcatcgtcatcacccacggccacgaggaccacctcggcgccctg
ccgtggatcctgcgcgagctcggcaccgacatccccgtctacggcggcccgctgacgatg
gcgatggcgcggtccaagctcgacgagcaccgcctcaaggacaccgacctgaccgacgtg
cggccgggggagaccctcgagctcggggcgttcgacatcgagctgatccacctgacccac
tcgatcccggacatgatggccgtggcgctgacgtgcgacgtcggcacgatgctcatcacc
ggcgactacaagttcgaccagacgcccgtcgacggcaagcccgccgacgtcagccgcctg
gccgagctggggcgcgaggggctgctgctgctgtgcggcgactccacgaacgccgaccgg
ccgggcttctcgcccagcgagtcggtggccggccccaacctcgaggcggtcttcggccgc
tgcgagggccgcatcgtggtgacctgcttcgcgtcgaacatccaccgggtccagcaggtc
gtcgacgcggccaaggtccacgggcgccgggtcgtcctcgtcgggcgctcgatgcgcaag
aacatcaacatcgggcggatgctcgggcacatcgacgtcgaggacgggacgttcgtgcag
ccgcgcgaggcccgcgacttccccgaccacaagctcgtcatcgtctcgacgggcagccag
ggcgagccgctgagtgccctgcgccggatggcccaccgcgaccacccgcaggtcgagctg
cacaagggcgacaccgtcgtgttcgccgccacgtcgatccccggcaacgagcgggccgtc
aacgacacgatcgaccggctctaccacatcggctgcgacgtcatcacggcgcgcgacgcg
ccgatccacgcctccggccacggctaccaggaggagatcaagctgatgctcaacctgacc
cggccgaagtacgtgatgccgttccacggcgactacaagcgcatccacctgcacggccag
ctggccgagtcggtgggcgtgcccgccgagaacgtgttcaagggcgagaacgggcttccg
ctggagctcgacggcgacggggcggcgttcggcagccgggagcgcgcggggatgatctac
gtcgacggcgtcgacatcggcgatcccaccgacgtcgcgctgcgcgaccgccggatgctc
agcgccgacggcatcttcgtcgtcgtggccacgatctccgagcaggacggctcctcggtc
gccgacccggagatcatcttccgcggcgtgccctaccccgaggacgccgagggcctgctc
ggcgacatccgcggggccatcacgcagtcgctggagaaggcggcccgggaggagatccgc
gaggtcgacctgctccagcaggtgctgcacgacgacctcgccaagttcgtctacgaccgc
ctgcgccggcggccgatggtgctgccggtcgtcgtggaggtctga

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