Baekduia soli: FSW04_16100
Help
Entry
FSW04_16100 CDS
T06127
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bsol
Baekduia soli
Pathway
bsol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSW04_16100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsol03019
]
FSW04_16100
Messenger RNA biogenesis [BR:
bsol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FSW04_16100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QEC48944
UniProt:
A0A5B8U781
LinkDB
All DBs
Position
3386455..3388119
Genome browser
AA seq
554 aa
AA seq
DB search
MAKSKLRVLPLGGLGEIGKNMTVVEYDGSIVVVDTGLRFPTAEQVGIDLVLPDFTYLRER
ADDIEGIVITHGHEDHLGALPWILRELGTDIPVYGGPLTMAMARSKLDEHRLKDTDLTDV
RPGETLELGAFDIELIHLTHSIPDMMAVALTCDVGTMLITGDYKFDQTPVDGKPADVSRL
AELGREGLLLLCGDSTNADRPGFSPSESVAGPNLEAVFGRCEGRIVVTCFASNIHRVQQV
VDAAKVHGRRVVLVGRSMRKNINIGRMLGHIDVEDGTFVQPREARDFPDHKLVIVSTGSQ
GEPLSALRRMAHRDHPQVELHKGDTVVFAATSIPGNERAVNDTIDRLYHIGCDVITARDA
PIHASGHGYQEEIKLMLNLTRPKYVMPFHGDYKRIHLHGQLAESVGVPAENVFKGENGLP
LELDGDGAAFGSRERAGMIYVDGVDIGDPTDVALRDRRMLSADGIFVVVATISEQDGSSV
ADPEIIFRGVPYPEDAEGLLGDIRGAITQSLEKAAREEIREVDLLQQVLHDDLAKFVYDR
LRRRPMVLPVVVEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggccaagagcaagctgcgagtcctcccgctgggtggactgggcgagatcggcaagaac
atgaccgtcgtcgagtacgacggctcgatcgtcgtcgtcgacaccggactgcggtttccc
accgccgagcaggtgggcatcgacctcgtgctgcccgacttcacgtacctgcgcgagcgg
gccgacgacatcgagggcatcgtcatcacccacggccacgaggaccacctcggcgccctg
ccgtggatcctgcgcgagctcggcaccgacatccccgtctacggcggcccgctgacgatg
gcgatggcgcggtccaagctcgacgagcaccgcctcaaggacaccgacctgaccgacgtg
cggccgggggagaccctcgagctcggggcgttcgacatcgagctgatccacctgacccac
tcgatcccggacatgatggccgtggcgctgacgtgcgacgtcggcacgatgctcatcacc
ggcgactacaagttcgaccagacgcccgtcgacggcaagcccgccgacgtcagccgcctg
gccgagctggggcgcgaggggctgctgctgctgtgcggcgactccacgaacgccgaccgg
ccgggcttctcgcccagcgagtcggtggccggccccaacctcgaggcggtcttcggccgc
tgcgagggccgcatcgtggtgacctgcttcgcgtcgaacatccaccgggtccagcaggtc
gtcgacgcggccaaggtccacgggcgccgggtcgtcctcgtcgggcgctcgatgcgcaag
aacatcaacatcgggcggatgctcgggcacatcgacgtcgaggacgggacgttcgtgcag
ccgcgcgaggcccgcgacttccccgaccacaagctcgtcatcgtctcgacgggcagccag
ggcgagccgctgagtgccctgcgccggatggcccaccgcgaccacccgcaggtcgagctg
cacaagggcgacaccgtcgtgttcgccgccacgtcgatccccggcaacgagcgggccgtc
aacgacacgatcgaccggctctaccacatcggctgcgacgtcatcacggcgcgcgacgcg
ccgatccacgcctccggccacggctaccaggaggagatcaagctgatgctcaacctgacc
cggccgaagtacgtgatgccgttccacggcgactacaagcgcatccacctgcacggccag
ctggccgagtcggtgggcgtgcccgccgagaacgtgttcaagggcgagaacgggcttccg
ctggagctcgacggcgacggggcggcgttcggcagccgggagcgcgcggggatgatctac
gtcgacggcgtcgacatcggcgatcccaccgacgtcgcgctgcgcgaccgccggatgctc
agcgccgacggcatcttcgtcgtcgtggccacgatctccgagcaggacggctcctcggtc
gccgacccggagatcatcttccgcggcgtgccctaccccgaggacgccgagggcctgctc
ggcgacatccgcggggccatcacgcagtcgctggagaaggcggcccgggaggagatccgc
gaggtcgacctgctccagcaggtgctgcacgacgacctcgccaagttcgtctacgaccgc
ctgcgccggcggccgatggtgctgccggtcgtcgtggaggtctga
DBGET
integrated database retrieval system