Bacillus subtilis PY79: U712_00285
Help
Entry
U712_00285 CDS
T02937
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsp
Bacillus subtilis PY79
Pathway
bsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U712_00285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsp03400
]
U712_00285
Enzymes [BR:
bsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U712_00285
DNA repair and recombination proteins [BR:
bsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
U712_00285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_14
Motif
Other DBs
NCBI-ProteinID:
AHA76011
LinkDB
All DBs
Position
60430..63963
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNL
YQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA
PVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSENPVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARAM
EKIDSGLAASLKKLKADKQKEILHANISHDKERLSEGQTDQELVKYLSYFYEKPASLLDY
TPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDIRLSFSFQKIVAEQKRPL
LYYSLFLRHVHHTSPQNIVNVSGRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKERT
QKLSSVLADYDIEAAMTDSKKALVQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVK
KKPRKQKLTNAERIKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFE
TEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLF
TVAEMKVYARQERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNQYGRQIGLGMEGKK
LKISIQTKGRSADEWLDTVLGMLKGLKDVKKQTISST
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaacattcaaacctttataaaagaaagcgatgactttaaatccatcatcaacggt
ttacacgagggcctgaaggaacagctgctcgcgggtctgtcgggttccgcgcgttctgtt
tttacttctgctctggctaatgaaacgaataagcctatctttctcatcacccataactta
tatcaagcccagaaagtaacagatgatctgacttcacttctagaggatcggtctgtcctt
ttgtaccccgtcaatgaactcatttcatcagaaatcgcagttgcaagccctgaattgcgg
gcgcagcgattagatgtcattaatagactaacgaatggagaagcgccaattgtcgttgct
ccggtagctgcaatcagaagaatgctgccgcctgttgaggtgtggaaaagcagccagatg
ctcattcaagtaggccatgatattgaacctgaccagcttgcctcacggctggtagaggta
gggtatgagcggtctgatatggtttctgcgcccggggaattcagtattcgcgggggaatc
attgacatttatccgctgacttcagagaatccggtgagaattgaactttttgacaccgag
gtggattcaatccgcagctttaattcagatgatcagcggtcaattgagacccttacctcg
atcaatatcggtcccgcgaaggaattaattatcagaccggaagaaaaagcgcgggcgatg
gagaaaatcgatagtggtcttgccgcgagcttgaaaaaattaaaggctgacaaacaaaaa
gaaatacttcatgcgaatatttctcacgataaagaacgcttgtctgaaggccagacagat
caggagctcgtgaagtatctctcatatttctatgaaaagcctgctagtttactagattat
acacctgataatacacttctgattttggatgaagtcagtcggattcatgagatggaagaa
cagcttcaaaaagaagaagcggagtttataacaaatcttcttgaggaagggaagattttg
catgacattcgtttgtcattcagcttccaaaaaatagtggctgagcaaaaacggcctctg
ctgtactactctttatttttgcggcatgtacaccatacgagcccgcaaaatatcgtcaat
gtgtcaggccggcaaatgcagagtttccatggccaaatgaacgtgcttgcgggcgaaatg
gagcgttttaaaaaatcaaatttcactgttgtgttcttaggagcaaacaaggaacgtacg
cagaaattgtcatctgttttggctgattatgatatcgaggccgccatgacagacagcaaa
aaagcgcttgttcagggacaggtctatatcatggaaggcgagctccaatcgggatttgag
ctgccgttaatgaagcttgccgttatcacggaagaagaactgttcaaaaaccgtgtaaag
aagaagccgcgaaaacagaagcttaccaatgcagagcgcatcaaaagctattctgagctt
caaattggagattatgtcgttcatattaatcacgggatcggaaaatacctggggattgaa
actcttgaaatcaacggcattcataaagactatttaaatatacattatcagggcagtgac
aagctttacgtccctgtagaacaaattgatcaggtccaaaaatatgttggctccgaagga
aaagagccaaagctgtataaattaggcggaagtgaatggaagcgggtcaagaaaaaagta
gagacatccgttcaggatattgctgatgacttaattaagctgtatgccgaaagagaagcg
agcaagggctatgcgttttctcctgaccatgagatgcagcgtgaattcgaatcggctttc
ccttatcaagagactgaggatcagctccgttctattcacgaaatcaaaaaagacatggaa
agagaacgtccgatggaccgcttgctgtgcggagatgtgggctacggtaaaacagaggtt
gccatacgtgccgcgtttaaggcgatcggtgacggaaagcaggtagctctgctcgttccg
acaaccattttggcacagcagcactatgaaaccataaaagagcgcttccaggactatccg
attaatatcggccttctcagcaggttcagaacgagaaaagaagcaaacgaaacaatcaaa
gggctgaaaaatggaacggttgatatcgtcatcgggacgcatcggctgctatcaaaggat
gtcgtgtataaagacttagggctcctcatcattgatgaagagcagcgtttcggtgtaacc
cataaagaaaagatcaagcaaataaaagccaatgttgatgtattaacgttaacagcaacg
ccgattccgcgtacgctgcatatgtctatgcttggcgtaagggacctttcagtcatcgag
actccgccggaaaatcgcttccccgtacagacgtatgttgtggaatataacggcgctctt
gtcagagaggcgattgaacgtgagcttgcacgcggaggccaggtctatttcttgtacaac
cgggtagaggacattgagcggaaagcggatgaaatttcaatgctagtccctgacgcgaag
gtagcatatgcgcatgggaaaatgacagaaaatgaattagaaaccgttatgctaagcttc
cttgaaggagaatcagacgttctcgtcagcacaaccattatcgaaactggcgtggacatc
ccaaacgtcaatacgctgatcgtatttgacgccgacaagatgggactttctcagctttac
cagctgcgggggcgtgtcggccgttctaaccgtgtggcgtatgcgtacttcacgtatcgc
cgggataaagtgctgacagaagtggctgaaaaaaggctgcaggctattaaagaattcaca
gagttaggttccggttttaaaatcgcaatgcgtgacttaacgattcgcggagccgggaat
cttcttggtgcccagcagcatggcttcatcgattcggtcggatttgacctctattcacaa
atgctgaaggaggccattgaggagcgtaaaggagacacagcgaagacagagcagtttgaa
acagaaattgatgtcgagcttgatgcgtatattccggaaacttatattcaagacggcaaa
cagaaaattgatatgtataaacgcttcaggtctgtggcgacaatcgaagagaagaatgag
cttcaagatgaaatgatcgaccgctttggaaactatccaaaagaagtcgaatacttgttt
actgttgcagaaatgaaagtctatgcgagacaggaacgtgtcgagctgattaagcaggat
aaagatgctgtcagattgacgatttctgaagaagcaagtgctgaaattgacgggcagaag
ctgtttgagcttggcaatcaatatggcagacaaatcggactgggaatggaagggaaaaaa
ctcaaaatctccatacagacgaaaggccgtagtgctgatgaatggctcgacaccgtgctg
ggcatgctgaagggcttaaaagatgtgaaaaagcaaaccatttcatcaacgtaa
DBGET
integrated database retrieval system
