Bacillus subtilis PY79: U712_16825
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Entry
U712_16825 CDS
T02937
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bsp
Bacillus subtilis PY79
Pathway
bsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U712_16825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsp03019
]
U712_16825
03016 Transfer RNA biogenesis [BR:
bsp03016
]
U712_16825
Enzymes [BR:
bsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
U712_16825
Messenger RNA biogenesis [BR:
bsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U712_16825
Transfer RNA biogenesis [BR:
bsp03016
]
Prokaryotic type
tRNA degradation factors
U712_16825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1CSD-TOTE-2
S1_RRP5
TFIIE_beta
CSN8_PSD8_EIF3K
CsrA
Motif
Other DBs
NCBI-ProteinID:
AHA79299
LinkDB
All DBs
Position
complement(3269717..3272056)
Genome browser
AA seq
779 aa
AA seq
DB search
MEKEAFMEKLLSFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEEKGLIVRTRS
DRYGIPEKMNLIKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGAAEGHKV
VVKLTSYPEGRMNAEGEVETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPDTI
DEKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQ
SVIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDF
KEAKVLVDDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAKYDP
QSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAERLPDIAEHT
SSMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIVGMKGTPRRPREL
DSSRSRKRGKPARKRVQSTNTPVSPAPSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcatttatggaaaagcttctctcgtttatgaaggaagaggcgtacaaa
cctctgaccgttcaggaacttgaggagatgttaaatattacggaagccgaggagtttaaa
gagctcgtcaaagcgttagtcgccttggaagaaaaagggcttatcgtacggacgagaagc
gaccgctacggcattccggagaagatgaatttaataaaaggaaagatttcagcccatgcg
aaaggattcgcctttttgctgcctgaggatacgtcgttaagtgatgtgtttattccgcct
aatgagctaaatacggcaatgaacggcgatatcgtcatggtgcgtctgaactcacaatca
agcggctccaggcaggaaggaaccgtcatacggattttagaaagagcgattcagcgggtt
gtcggcacgtatacagaaacgagaaacttcggctttgtcattccggacgacaaaaaaatc
acgagtgacatcttcattccgaaaaatgggaaaaatggagctgcggaagggcataaggtt
gttgtcaagctgacgagctatcctgaaggccgcatgaacgcagagggtgaggttgaaacc
attctcggccacaaaaacgacccgggcattgatattttatcggtcattcataagcacggc
ctgccgggagaatttccagctgacgcgatggaacaggcatcaagtacgcctgacacgatt
gatgaaaaagatctgaaagaccgccgtgatctccgtgaccaggtgattgtcaccattgat
ggtgcggatgcgaaggatttggatgatgcagttaccgtgacgaagcttgatgatggaagc
tacaagcttggcgttcacatagctgatgtcagccattacgtaaccgaaaactcgccgatt
gacaaagaagcgcttgaaagagggacaagtgtgtatctggttgaccgtgtcatcccgatg
attccgcacagattgtcaaacggcatctgctccttaaatccaaaggttgaccgcctgacg
ctttcttgtgaaatgacaattaacagtcagggacaggtgacagagcacgagatcttccaa
agtgtcatcaaaacaacggaaagaatgacatattcagatgtgaataaaattcttgttgat
gatgatgaagagctgaaacaaaaatacgagcctcttgttccgatgttcaaagacatggag
cgtctggctcaaattctgcgcgataagcggatggaccgcggcgccgttgactttgatttc
aaagaagcaaaggtgcttgttgatgacgaaggagcggttaaagacgttgtgatcagagaa
cgctctgtcgccgagaagctgattgaagaatttatgcttgtagcaaacgaaacagttgcg
gagcatttccattggatgaatgtcccgtttatataccggattcacgaagagccgaatgct
gaaaagctgcaaaagtttttagaatttgtgacgacatttggctatgtggtgaaaggaacg
gcggggaatattcatccgcgcgcgctgcaaagcattctggacgctgtgcgtgacagacca
gaggaaacggttatatctactgttatgctccgttcgatgaaacaggcgaaatacgacccg
caaagcttggggcacttcggtctgtcaacggaattctatacgcatttcacatcaccgatc
cgccgttacccggacttaatcgttcaccgtctgatccgaacgtatttgatcaacggcaag
gtcgatgaagcgacacaggaaaagtgggctgaacgcctgccggatatcgccgaacataca
tcatctatggagcgccgtgcagttgacgccgagcgtgagacggatgatctgaaaaaagcg
gaatacatgcttgataaaatcggtgaagagtttgacggcatgatcagctctgtgacaaac
ttcggaatgttcgtcgagctgccgaatacaattgaaggactcgtccatgtcagctttatg
acagatgactactaccgctttgacgaacagcatttcgcaatgattggcgagcggacaggc
aacgtcttccgcatcggggatgaaatcacagtcaaggttgtcgatgtcaataaagatgag
cgcaatatcgactttgaaattgtcggcatgaaaggcactccgcggcgtccgagagaattg
gacagcagccggagcagaaaacgcggaaagcctgccagaaaacgtgttcaaagcaccaat
acacctgtttctccagctccgtctgaggaaaaaggggagtggttcactaagccgaagaag
aaaaagaaaaaacgcggcttccagaatgctccgaaacagaaacggaaaaagaagaaatag
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