Betta splendens (Siamese fighting fish): 114842830
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Entry
114842830 CDS
T08231
Symbol
col6a4a
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04510
Focal adhesion
bspl04512
ECM-receptor interaction
bspl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114842830 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114842830 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114842830 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bspl04147
]
114842830 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
bspl00536
]
114842830 (col6a4a)
Exosome [BR:
bspl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114842830 (col6a4a)
Glycosaminoglycan binding proteins [BR:
bspl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114842830 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
114842830 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
114842830
NCBI-ProteinID:
XP_028984593
UniProt:
A0A6P7KVH6
LinkDB
All DBs
Position
16:complement(5579299..5609984)
Genome browser
AA seq
2756 aa
AA seq
DB search
MEWRTGLLLCLITAACFYGNAAQRTVCTQEAVADIVFMVDGSWSIGASNFEQIRLFLYTL
VNSFDIGPDRVRIGLVQYSTTPRTEFLLRTYQTKQEILNYITKLPYRGGGTHTGEGLDFI
LKEHFVEAAGSRAAQKVPQITVVITDGESQDDVKSSADELKRKGMVLYAIGIKDADEDQL
REIASRPYHQHVYSVSDFAALQGISLNIAQTLCTTVEEAKRQLLQLFPECATATVADIVF
LVDGSSSIGDTNFQEIRKFLRSVVSNLDIGPNKVRLGLAQYSDEPYQEFLLKDHMDRKSL
LSVLDTFSYRTGSKKTGKAIDFILQTYFTEEAGSRANQRVPQIAVIITDGGSTDNVTEPA
QRLRQHGVLVFGIGVGEAGMNELADIANRPRKRFLFSIDNYQALRGLTSSLLQTVCVSME
NQRLALAERFTDIFFLVDSGVSATDFQQVRNIMFRLVNQLKIGGSGHRLGLAQYGQDVKV
EFLFNAFQTKNETLGGIKRFRQRKLQPNEPRNLGSALASASFIFSSESGSRADRGFKQYL
IVVSGKDSDDPVYKSSRQIKAEGITVVGLSLGASENEMRVIATPPYFFLSIASIVPTLKG
VIEMEKDQTTLTGDCKAAKLADIVFIVDESGSIGTNNFQLVRDFLYSIVSGLDVSLNRVR
VGIVTYNGRPNTLVYLDSFSDKNELQNFIKILPYHGGATNTGAAIKFTREKIFIESRGSR
EGKGVQQVAVVITDGESQDNVSNAAANLRRDGVIVYAVGVKDANEEQLRQIASYPPNKHV
YTVDNFVKLKALDQSLQKSLCQNILQQAITVSSRRSDIKEGCTQTDEADIFFLIDQSGSI
YPSDFQDMKKFIIEFLRTFHIGPQHVRIGLTKYADVPSLEFDLPKYADAQALEKAVENIQ
QLGGGTETGRALAFMSPYFDNAKVTRGHKVREFLVVITDGNSTDEVKAPAERLRQQGVTI
YAIGVKGAYEKQLQEISGDSSKTFFVNNFDALRPIKDDIISDICSEDACKDIPGDLIFLI
DSSGSIYPEEYEKMKQFMKSVITKSIIGKNEMHVGVLQFSTIQQLEFRLNQFYTKNALSR
AIDAMQQIGGGTHTGQAITEVSKYFDVTNGGRPDLRQRLVVITDGEAQDEVKAPAEALRA
KGVVVYAIGVVDANTTQLLEISGSPERMYAERDFDALKDLESHVALELCDPDRDCKKTEK
ADIIFLVDGSTSIDPPEFKSMQKFMISIVNQTTVGKDLTRFGVILYSTEPQSVFTLKDYG
SKTEVLTQISNLSNPHGDTYTSKALTYTLQFFDAKHGGRAELRVPQILMVITDGDATDRN
KLVAPSVALQQQGISVFSIGVEGANKTQLEIMAGHDKSKVFYVDNFSALESLYKNITQVL
CNSTKPACEKQKADLVFLLDQSGSIDSNDYNTMKMFTAELVKSFSVSQDLVRVGLAQFSD
VFQHEFYLREYYKEDLVTKHILAMTQRGGGTQIGMALDSIMDFFKASQGSRRSDGVSQNL
VLITDGESQDDVEEAADRLRNLGIEIFAIGIGDVHDLELLQITGNPQRLFTVQNFGSLEN
IKQKVVDTICKSKPQQEPAGCSIDIAMGFDITRRNGDALMSGHNKLQTYLPEIAQYVSSV
SGLCCGGSAPVKTNLAYRILSQDGRSLDDFKFEGYSEEVLRKVMTLSVKGPMYFNTALLE
SFKDKFKVQSRAGVKVLLIFSDGLDEDVMKLEQESEELRQSGVSMLLVVALEGVHDSAQL
QAVEFGRGFGYKLPLSIGMQSVASTVLKQIDAVSDRECCNVMCKCSGHEGIRGSWGPSGT
KGQSGQKGYPGFPGEEGSAGDRGHPGPSGPQGIQGCPGLRGLKGNRGLRGNTGENGEDGL
DGVNGEQGATGLGGARGQRGDAGNPGIPGIRGELGVRGQPGLRGDPGEPGADNTTPGAKG
EPGNPGSPGVPGQDGRSGESGVEGNQGPDGRRGPDGQEGASGAAGEPGTAGSAGASGQQG
PRGIGGQPGPRGAPGLPGPQGGPGTPGNPGLSGRRGTVGPKGQPGEPGSKGEPGPQGPSG
LPGHDGKDGHGPAGSKGAKGDPGFPGYPGLTGESGLQGPKGFPGPKGNQGTQGNSGRPGE
SGVSGEPGHPGHRGPRGPPGGKAKTECELITYIRDNCACSPERSACPAVPTELVFALDMS
EDVTPASFERQRSALLHMLHDLSIAESNCPTGARVAVVAFSTYTKYLIRFHDYRRKKQLM
EAVRNVALERTSNRRHLGATMLFVAQNVLKHTRAGALMRRVAVFLSAGSTQDVEDVVTAT
MLYRALNVVPAVISLRNAPDISRALEVDDSGGSIFRVLGRDMAADLRRVSNCAICYDPCQ
RTEQCAFIQTPPQPLEVDVDLAIVADSSREMQSDEYAGIQQLLGSVVEQLAVSQQPSRPG
SQARVAVIQQSSRAKVEFGLQTYQNQDQMRSQIKKMQQLGGSSMLGQTLEVALTEVLLKA
RHPRRKRALMVVVGSQTTHTDLDKLHYVSQKAQCEGVALFVVTVGDGYSRRQTEQLASLP
VQQHLIHVETLKAHEQGFAQRFFRLFLSALNKGINTYPAPSLRQTCDQLTDQQGGQTITS
GQAQGRRQQDEEEEEEEGFQAHTGGQTQIQLDTIDAQRFVSVNLDARCQLGVDAGSQCDD
FVQLWFFDTRLGACSPFWFGGCGGNANRFKTENECFSTCVTHNPSVLLKPQLPSFASKEA
CFQQQDPGTCQNYTMMWFFDTEQNECSRFWYSGCHGNANRFKTQEDCENLCLTRSR
NT seq
8271 nt
NT seq
+upstream
nt +downstream
nt
atggagtggaggacggggcttctgctctgcctcatcacagcggcctgtttctacggcaac
gctgcccagaggacagtctgcactcaagaagctgtagccgacatcgtcttcatggttgat
ggttcgtggagtatcggcgcaagcaactttgagcaaatccgtctgtttctgtacacactg
gtgaacagcttcgacattggtcccgaccgtgtccgcatcggcttagtccagtacagcacc
actccacgcacagagttcctactcaggacctatcagaccaagcaggaaatcctgaattat
atcaccaagttgccatacaggggcggtggcacccacacaggcgagggcttggacttcatc
cttaaagaacactttgtggaagcagctggcagtcgagctgcccagaaggttccacagatc
actgtggtgatcaccgatggcgaatcacaagatgatgtgaagtcctctgccgacgagttg
aagagaaaaggaatggttttgtatgcaattggtatcaaagacgcggatgaagaccagctc
agagagatagctagcaggccgtaccaccagcatgtttacagcgtgtcagactttgctgct
ctgcagggaatttcactgaacatcgctcagactctatgcacaacagtagaggaagctaaa
cgacaactcctgcaactgtttccagaatgtgctacagccactgtggcagacattgtgttc
ttggtcgatggctccagcagcattggcgacactaactttcaagagatccgaaagtttctg
agaagcgttgtctccaaccttgacattggccccaataaagtccgacttggcctggcacag
tacagtgacgaaccttaccaggagttcctcctgaaggaccacatggacaggaagtccctg
ctgtctgtgctggacacattttcctaccgtacaggaagcaaaaaaaccggcaaggccatc
gacttcatcctgcagacatatttcacggaagaggccggaagcagagccaaccagcgagtg
ccccagattgctgtcatcatcacagacggagggtcaacagacaatgtgacagagcctgcc
caacgcctgaggcagcacggcgtcctggtgtttgggatcggggtgggagaggccggcatg
aatgaacttgcagacattgctaatcgcccccgaaagcggttcctgttttccattgataac
taccaagcactgcgggggttgacaagcagtctgctgcaaacagtttgcgtctccatggag
aatcaaaggctagccttggcagaaaggttcacagacattttcttcctggtggacagtggt
gtgagtgctacagactttcagcaggtcaggaatattatgtttcgactggtcaatcaactt
aaaattggaggatctggccaccgtcttggcttggcccagtatggtcaggacgtaaaggtg
gaatttcttttcaatgcttttcaaaccaaaaacgaaaccctgggaggcataaagcgcttc
cgtcaacgtaaacttcaacccaacgagccacgcaacctcggcagtgcactggccagtgct
agcttcattttcagtagcgagtcaggaagccgtgccgaccgaggcttcaaacagtacctg
attgttgtaagtggaaaagactccgatgatcctgtttataagtcatcacgccaaatcaaa
gcagagggaataactgttgtgggcttgagtctcggcgcatccgagaatgaaatgcgtgtc
attgcaactccaccatacttcttcctatccatagcgagcattgttcccacactgaagggt
gttatcgaaatggagaaggaccagaccactctcactggagattgtaaagcagccaaactt
gcagacatagtgttcattgtggatgagtctggaagcataggcaccaataactttcagttg
gtccgtgattttctctactccattgtaagcggtctggatgtcagtctaaatagagtcaga
gttggcatcgttacatacaatggcaggcccaacacactggtctaccttgacagctttagt
gataagaatgaactacagaacttcattaaaatcctgccctatcatggaggggccacaaac
acaggcgctgccatcaagttcaccagggaaaagatttttattgagtcaaggggaagcagg
gaaggtaaaggtgtgcagcaggtggcagtggtgatcacagatggggagtcccaggacaac
gtgagcaatgcagcagctaatctccgtcgggacggagtcatcgtttacgctgtaggagtc
aaagatgccaacgaagagcagctaaggcaaatagcgtcgtatccccccaataagcatgtg
tatactgtggacaacttcgtcaagctgaaagctctggaccagagcctgcaaaagtccctt
tgtcagaacatcctacagcaagcgatcacagtcagttcgagaagaagtgacatcaaagaa
ggctgtacacaaacggacgaagcagacatcttctttctgattgatcagtcgggaagtatt
tacccctctgacttccaagacatgaagaaattcatcatagagtttctgcgcacatttcat
attggcccccaacatgtccgcataggactcacaaaatacgctgatgtgccaagcctcgaa
tttgatctgccaaaatacgcagatgcccaggcattagagaaagctgtggaaaatatccaa
caattgggaggtggcacagaaacaggacgagcgttggcatttatgagtccctactttgac
aatgcaaaggtcactcggggtcacaaagtcagagagttcctggtggtcattactgatgga
aattccacggacgaggtcaaagctcctgcagaaaggctgaggcagcagggggtcaccatc
tacgccattggagtgaaaggggcatatgaaaagcagctgcaggagatttctggcgactca
tccaaaacattttttgtcaacaattttgatgcactgaggcccataaaggatgacataatc
tctgatatctgttcagaagatgcctgcaaagacatacctggcgacctgattttcttgatc
gacagctctgggagcatctacccagaagagtacgaaaaaatgaagcaatttatgaaatct
gtcatcaccaagtccatcattggaaaaaatgagatgcatgttggtgtcctgcaattcagt
accatccaacaactagagtttcgcctcaaccagttctacaccaagaatgcattgtcaaga
gccattgatgctatgcagcagattggaggaggcacgcacacaggccaagctatcacagag
gtgtcaaagtattttgatgtgaccaatggaggccgtccagacttaaggcagagacttgtg
gtgataacagacggtgaggctcaagatgaggtgaaggcgcctgctgaggctctgagggcc
aagggagttgtggtgtatgccatcggagtggtggatgccaacactacccagctgcttgag
atcagtgggtctccagaaaggatgtatgccgagagggactttgatgctctaaaggatttg
gagagccacgtggccctggaactttgtgatcccgacagagattgtaagaaaacagaaaaa
gctgacatcattttcctcgtggatggctccacaagcatcgaccctccagagttcaaaagc
atgcagaaatttatgatatcaatagtgaaccaaaccacagttggcaaagacctgactcgc
tttggggtcattctctattccacagagcctcaatctgttttcactctgaaagattatggt
tccaaaactgaagttcttacacaaatatctaatctgagcaacccacatggagacacatac
accagcaaggctttgacatacacgttacagttctttgatgctaaacacggtggtcgggca
gaactccgggtgcctcagattctcatggtgattactgatggcgatgctactgatcgtaac
aaactggttgcaccatcagtggcactgcagcagcagggtataagtgtcttcagcattggt
gttgagggagccaacaagactcagctagagatcatggcaggccacgacaaatctaaagta
ttttatgtggacaattttagtgccctcgaatctctgtacaagaatattactcaagttctc
tgcaattccaccaaaccagcttgtgagaaacaaaaggctgacctggtgtttctattggat
cagtctggcagcattgactcaaacgactacaacactatgaaaatgttcacagcagaatta
gtgaaaagctttagtgtcagccaagacttggtgcgtgttggccttgcccagtttagcgac
gtcttccagcatgagttttatctgagggagtactacaaagaggatttggtgaccaaacac
atcttggctatgactcagcgtggcggaggaacccaaattggaatggccctggactccatc
atggatttttttaaggcatcacagggcagtcgcagatctgatggggtgtcccagaacctg
gtgctgatcacagatggtgagtcacaggatgatgtggaggaagcagctgaccgactgagg
aatctggggattgaaatattcgccattggcattggagacgtgcatgacctggagctcctg
cagattactggaaacccacagaggctgttcactgtgcagaactttggcagtttggaaaac
atcaaacaaaaggtggtcgacaccatttgtaaatccaagccccaacaggagcccgcaggt
tgctccattgacatcgccatgggattcgatattactcgaagaaacggtgacgcgctgatg
agtggccacaacaagctccagacctacctgccagagattgcgcaatatgtttcctcagtt
tcaggtctttgctgcggtggctctgcacctgttaaaacaaatctcgcctaccgaatactg
agtcaagatggacgatctctggatgacttcaaatttgagggctacagcgaggaagtgttg
aggaaagttatgaccctgagtgtaaaggggcccatgtatttcaacactgccctacttgaa
tccttcaaggacaagttcaaggtccagtccagagctggtgtaaaggtgctgctgattttc
tcagatggacttgatgaggatgtcatgaaactggagcaagaatcagaggagctgcgtcag
tctggggtcagcatgctgctggttgtggcgctggagggggtgcatgactctgcccaactg
caggctgtggagtttggtcgcggattcggctacaagctccccctcagcatcggcatgcag
agcgttgccagcactgtcctgaaacagattgacgcggtgtcggatcgggagtgttgcaac
gtcatgtgcaagtgttcaggacatgaaggcatccggggctcctggggcccgtcggggaca
aagggccagtccgggcagaaaggataccctggcttccccggagaggagggcagcgctggc
gatcgagggcatcctggaccgagtggaccccagggcattcagggttgtcctgggctccga
ggtctgaagggaaaccgaggcctccgagggaacacgggagaaaatggagaagacggactg
gacggagtcaacggagagcagggagcaactggactgggtggagctcgaggacaaagagga
gacgcaggaaacccggggatcccaggtatcagaggggagctgggtgtgaggggacaacca
ggactgagaggagacccaggtgaaccaggggctgacaacaccacaccaggagccaaggga
gagcctggcaacccgggttcaccgggtgtacctggacaggacggtcgatcaggtgagagt
ggagtcgaaggaaaccagggtccagatggaagaagaggacccgacggccaggagggggca
tctggagcagcaggagaaccaggaaccgcaggtagcgccggcgcttcaggtcaacagggt
cccagagggatcggaggtcaacctggacctagaggagcccccggactccctggacctcag
ggtggacctggaacacctggaaacccaggactgagcggacgccgtgggactgttggacct
aagggacaaccaggagaaccggggagcaaaggggaaccgggaccacagggacccagcggg
ctgcccggtcacgatgggaaagatggtcacggacctgccggaagcaaaggtgcaaaggga
gacccaggcttccccggttaccctggactgacgggagagagcggcctgcagggccctaaa
ggattccctggacccaaagggaaccaggggacacagggaaactccggcaggccaggagag
tcaggcgtgtctggagaaccaggacatccaggacacaggggtcccagaggtcctcccgga
ggaaaggccaagaccgagtgtgagctgatcacctacatcagagacaactgtgcctgttct
cctgagcggtccgcgtgcccggccgtccccactgagctggtgtttgctctggacatgtct
gaggatgtgacgccagcctccttcgagaggcagcgctctgctctcctccacatgctgcat
gacctctccatcgctgagagcaactgtccgaccggggcccgggtcgccgtggtggcgttc
agcacctacaccaagtacctgattcgcttccacgactaccggcgcaagaagcagctgatg
gaggctgtgcggaacgtggccttggagaggacgtccaacaggcgccatctgggggcgacc
atgctgtttgtggctcagaacgttctcaaacacacccgagcaggcgccttaatgaggagg
gtggccgtcttcctgtctgctgggtccacgcaggatgttgaagacgtggttactgccacc
atgttgtaccgggctctcaacgttgtcccagcagtcatctccctgaggaacgctcccgat
atcagtcgagccttggaggtcgacgactcggggggctccatcttcagggtgctggggaga
gacatggccgcagacctgaggagggttagcaactgtgcaatctgttacgacccgtgccag
cgcacagagcagtgcgccttcatccagacgcccccgcagcctctggaggtggatgtggac
ctggccattgtggccgacagctccagggagatgcagtcagatgagtacgctggcatccag
cagctgctgggctctgtggtggagcagctggccgtgagccagcagcccagccggccgggc
agccaggcccgggtagctgtgatccagcagagcagccgagccaaggtggagtttggtctg
cagacctaccagaaccaagaccaaatgaggagccagataaagaagatgcagcagctggga
ggctcgtccatgctgggccagaccctggaggtggccctgactgaggtgctgctcaaggcc
cgacatccccgaaggaagagggccctgatggtggtggtgggctcccagacgacgcacacg
gacctggacaagctgcactatgtctcccagaaagcccagtgtgagggtgtagcgctgttc
gtggtgacggtgggcgatggctacagccgcagacagacggagcagctggccagtctgccg
gtgcagcagcacctgatccacgtggagacgctgaaggcccacgagcagggattcgcccag
cgcttcttcagactcttcctgtcggcgctcaacaagggaatcaacacgtatcctgctccg
tcactaaggcagacctgtgatcagctgaccgatcagcagggaggacaaaccatcacctcg
ggacaggcccaagggcggcggcagcaggacgaggaggaggaggaggaggaaggcttccag
gcgcacacaggaggacagacccagatccagctggacaccatcgacgctcagagattcgtc
tctgtcaatctggacgcccggtgtcagctgggtgttgacgctggttcccagtgtgatgac
tttgtccagctttggttctttgacacgcgcctcggtgcatgctctccgttctggttcggc
ggctgtggcggaaacgccaaccgctttaaaacggagaatgaatgtttctccacgtgtgtc
acccataatccaagcgtcctgctgaagccacagctgcccagcttcgcctccaaagaggcg
tgtttccagcagcaggaccccggcacctgccagaactacaccatgatgtggttcttcgac
accgagcagaatgaatgttctcgcttctggtacagcggttgccacggcaacgcaaaccgc
ttcaagacgcaggaggactgtgagaacctctgcctgaccaggagtcgatga
DBGET
integrated database retrieval system
