Betta splendens (Siamese fighting fish): 114843329
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Entry
114843329 CDS
T08231
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114843329 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114843329 (smg5)
03032 DNA replication proteins [BR:
bspl03032
]
114843329 (smg5)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
114843329 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
114843329 (smg5)
DNA replication proteins [BR:
bspl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
114843329 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
114843329
NCBI-ProteinID:
XP_028985612
UniProt:
A0A6P7KSP1
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All DBs
Position
16:complement(7781402..7792659)
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AA seq
1114 aa
AA seq
DB search
MSGPGQDSEPEAKVLHIKRLYRVVVESVHKLDVIIGNKASYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSTLECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATLKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDV
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSSSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPPPTHGAVHHSTSEEEEEQHSDGSSPVLPDTLVFKM
VVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEAETQVPPLHPEIT
DDARDLSAPPTDYSDPRPLQNGSLEQEDEEELKNEDGHLQKDRSVEEQGKLEEEKQRQKK
KYTRLSRLRRRRCAHKDGHEEDESDLSEGFESEDDEDDDEEGRGRADSTGGTASGTPVSA
SSVRKNTKGDPLAEAGSWGSGSEEEEEEGGTAFDVETDSDMNSQESRSDLEDMEDTENSD
KEGQAREHPDEEEDQPKEEAADRDGDTPPATNGPLMPSDSSISSNLQAMSSQLFQAKRCF
RLAPTFSNMLLRPQASSASGIPTPTDASAPPSQETPPPPPEDSPCNVNPGTANGTNDNDS
DSDSEGSQHSTQSVQSEKTLLEKLEILSNQGLIQVVKVFVDWLRTNTDIIVMCAQSSQSL
WNRLSVLLNLLPDGSKMLEAELGLNAEVTGLVNACEQPALVQSLLLPEDLALRHLPALSV
AHRRLDFSHRSPSLSPLQECVVRVCCIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSKQD
NLEQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTA
ALCQHLNLIRQLAGSGCFIVIIPRIVIDGLDRLKKENAGARDGIRFLESEFRKGNRYIRC
QKESGRSFERDKVKRQDIEAWHLYKMVDSCRQLTVSQSNGDEDTAGMVTILTGHQVEALY
TQSAAMKSAIQVAGSSGMELKNIVEFYRQWKEIG
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaccgggtcaggacagcgagccagaggctaaagtcctacacatcaagcggctt
tacagggttgtggtggagtctgtgcataagctggatgtcatcatcggcaacaaagcgtcc
tacagagaggtcttcaagcccgagaacatcagtcttcgtaacaaactaagggaactttgt
gtaaaactgatgtttcttcatccggtggactatggccgtaaggctgaggagctgctctgg
aggaaggtttactatgaggtcatccaagttatcaagaccaacaaaaagcacatccacagc
cgcagcactctggagtgtgcgtatcgtacacacctgattgccggagtgggtttctaccaa
catctgctgctgtacattcagtcgcattaccagctggaactgcaggactgcattgattgg
acccacgtcacagaccccttgattggccgaaagaaaccagtgtcagctaccctcaaggag
atggagtgggcgcagatggcctgtcatcgctgtctggtctaccttggagatttagcccgt
taccagaatgagcttgcgggagtggaggccgagcagctggcggagaggttttaccatcag
gccctgtctgtcatgccacatgtgggaatgccttttaaccagctgggcacactggcaggg
agcaagttctacaatgttgaagcaacctactactacctacgctgcattcaatcagatgtc
ccatttgagggtgcttatggcaacctgaaacgcctgtttgacaaagctgccaagatgtat
caccaggtgaagaagcaggaaatgaagaagctgtcttcttctcggcaaagatcaaaagac
attaagcgtctcttggtaagcttcatgtacctccagagtctactgcagcctaaaaacagt
ctgatggagacggagttgacatcactgtgccagtctgtgcttgaagatttcaacctggtg
ctgttctacctgccgccgccgacacatggtgctgttcaccactccaccagtgaggaagag
gaggagcagcacagtgatggctcctcccccgtgctgcctgacacccttgtctttaagatg
gtggtcacttgtctcatggtggttcacagtctgaagaggggaggctcgaagcagtacagt
gcgtctatagcttttactctggccctgttctcccatctggtcaaccatgtcaacatccga
ctccaggctgagttggaggaagcagagactcaggtgcctccacttcatcctgaaatcaca
gatgatgcaagggatttgtcagctcctccgacagattactctgatccaaggcctttgcaa
aatggctccttagaacaagaggatgaggaggagctgaagaatgaagatggccacctgcaa
aaggacagaagtgtggaggagcagggcaaattggaggaagagaagcagaggcagaagaag
aagtacacgcgtctgtctaggctccgccggcgccgctgtgcccacaaggacggtcacgaa
gaggatgaaagtgacctgagtgaagggtttgagagcgaggacgatgaagatgacgatgag
gaagggagaggtcgtgctgattcaacaggcggcactgcatcaggaactcctgtcagtgct
tcatcagtgaggaaaaacacaaagggagaccccttggctgaggcaggcagctgggggagt
ggctcggaggaggaggaggaggaaggtgggacagcgttcgatgtagagacagactcagat
atgaacagccaggaatcccgctcagacctggaggacatggaggacactgagaactcggac
aaagagggccaggctcgggaacaccccgatgaagaggaggaccaacccaaggaggaagcc
gctgaccgggacggtgatacccctccagccaccaacggacccctcatgcccagtgattcc
agcatcagtagtaatctccaggccatgtcctcgcaactcttccaggccaaacgctgcttc
cgtctggcaccgaccttcagcaacatgctgctgagacctcaagcatcgtctgcctctggg
attcccacccctactgatgcctctgctcccccttcccaagagacccctcctcctcccccg
gaggactccccctgcaacgtgaaccctggcaccgccaacggaaccaatgacaatgactcc
gactctgattcggagggaagccagcacagcactcagtcagtacaaagtgagaaaacccta
ttggaaaagctggagatcctgagcaaccagggcttaatccaagtggtgaaggtcttcgtt
gactggctgaggaccaacactgatattattgtcatgtgtgcacagagttcgcaaagcttg
tggaaccgcctgtctgtgctgctcaacctactaccagatggcagcaagatgcttgaggct
gagcttggtctgaatgcggaggtgacagggctggtaaacgcgtgtgagcagcctgctttg
gtccagagtcttctgctgcctgaggatttagcgctgcgacacctgcctgccctcagcgta
gctcaccgccgccttgacttctctcatcgcagcccgtctcttagccccttacaggagtgt
gtcgtgcgagtgtgttgcattcgcagttttggccacttcctaacaaatctccagggcaac
gtgctgcacttcaacccggaggcgggcatcttcaccagtatcagccagtccaaacaggat
aatctggagcagcaggccaaggcccagttccgaatggctgaggaggaagcacgtcgaaat
cgtttgatgagggacatggctcagcttcgattacagctggaggtgtcgcagctagagggc
agccttcagcagcctaaggcccagtcgtccatgtctccctacctggtgccggacacagct
gctctgtgccagcacctgaacctcatccgccagctggccggcagtggctgcttcatcgtc
atcatccctcgaatagttattgatggacttgacagattgaaaaaggaaaatgctggtgct
cgggatgggattcgcttcttggagtctgagttccgcaaaggaaacagatatatacgctgc
cagaaggagtcaggtcgcagttttgaacgagataaagtcaaaaggcaggacatcgaagcc
tggcatttgtacaagatggtggacagttgtcgtcagctaacagtctcccagagcaacgga
gatgaggacaccgctggtatggtgaccattcttaccggccatcaagttgaagctctatac
actcagtctgcagccatgaagtcggcgatccaggtggccggctcgtctggcatggagctg
aagaacatcgtggagttctatcggcagtggaaggagatcggttga
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integrated database retrieval system
