Betta splendens (Siamese fighting fish): 114843978
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Entry
114843978 CDS
T08231
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04510
Focal adhesion
bspl04512
ECM-receptor interaction
bspl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114843978
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114843978
09142 Cell motility
04820 Cytoskeleton in muscle cells
114843978
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bspl04147
]
114843978
00536 Glycosaminoglycan binding proteins [BR:
bspl00536
]
114843978
Exosome [BR:
bspl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114843978
Glycosaminoglycan binding proteins [BR:
bspl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114843978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
LisH_2
Motif
Other DBs
NCBI-GeneID:
114843978
NCBI-ProteinID:
XP_028986772
UniProt:
A0A6P7KWC8
LinkDB
All DBs
Position
17:8957922..8974138
Genome browser
AA seq
1671 aa
AA seq
DB search
MGRPAAIVPLILLAVMLMGTGAKNCVCSGKSRCHCPGVKGSRGDKGFPGEPGPPGPQGRP
GSAGHAGPIGPKGNTGPDGPAGPKGNPGPDGKEGFAGSHGLPGVPGLQGPPGPPGAPGCN
GTDGEDGLPGVPGAHGLDGQPGAPGPPGPKGDSLVLVDPMPGPKGLPGRKGELGLQGFAG
DPGPPGDPGPRGSFGLIGRAGAQGSKGQEGIGGMPGPRGPKGNQGPRGPPGPPGRVKEFL
SGSQVLKGTKGDKGNAGEKGCKGEPGDTFDGYYFKGEKGDQGSVGQEGKPGKDGDLGEPG
HRGRPGPTGATGYQGTPGDKGEKGNRGLPGSPGSIGFVHEPLKGFRGEPGSPGLPGPPGP
QGVVGFPGPAGLPGHATGFFLPGPQGPSGFPGPKGDPGDPGSVNVGRPGPAGDPGDQGPS
GDIGEPGPPGDRTNRITKAPPGIKGMSGIAGPQGYDGLIGIKGQKGEPCNECTGQGPTGP
PGPPGPPGSPGYNQGPGPKGDPGFPGPRGLLGRPGPLGETGLQGPPGQKGDPYHYSNHGI
KGERGSPGIPGRPGADGYPGSPGLPGHKGNQGFPGDTNLFPGHDGDKGFRGQPGPAGSPG
PVGEPGRVGYGPLGLEGIKGDSGVPGLPGQPGIPGPKGEPGHIHGKGFPGPPGFKGQPGS
PGIPGDQGTSGPPGSPGLAGEKGERGDVSWPGSLGIPGPKGDKGQPGLPGLPGRGLPGQP
GTPGLPGLPGPQGESGLGYPGPPGLPGLPGETGIQGPMGDPGSPGLPGVPGLTGNPGFPG
EKGNKGFQGPPGLPGTKDLCMGLPGPMGPPGPDGYSGHPGPNGSPGEKGNVGGPGFGRPG
PPGEPGFLGPSIPGLSGISGQKGIKGQNGLPGLPGLKGDPGPDGLPGYGPEGLPGIMGPP
GQIGSQGPDGARGPQGPSGIQGDLGPKGPKGRSPTPPADLIGPPGEAGDTGYPGLGGPPG
ETGSTGSKGQRGQGGVPGSPGLRGAPGDPGRDDPLSKGSQGPDGAPGDPGVIGPLGPKGL
KGNPGVPGEPGPNGAPGLKGYKGHKGEPDDYRYGPPGPHGQKGEKGSINTHIMKGQKGEP
GLSGLLGQPGNHGSKGNKGPPGENGLPGYQGPIGSNGPPGGKGHRGPIGHPGDPGPPGVS
GTVGPKGNQGKDGIPGLPGEKGDTALVDGKTGRRGDTGQPGSPGDPGSPGFPGTGSPGLI
GDKGFPGPSGVFGPRGPPGHTGECVPGPKGARGPPGNVGRPGPPGFPGPPGPTVPGLKGD
RGEPGPTGNPGYSGSRGEPGSHGPPGERGRPGDQGPRGDPGRHGSQGPAGDRGDPGTIPG
LPGAPGAKGPPGPPGRTGQPGFVRFSYEPGPPGFLGPSGNRGAPGSTGPSGPPGVPGAPG
VKGAQGSSPTGLIGFPGNKGDKGRAGLLGPNGTPGYPGRKGIQGLPGRLVSGFVDSFLVA
RHSQSVYVPECPQGTSLIYSGYSFLFINGNERAHGQDLGTMGSCLPRFSPMPFLFCDTET
TCRYASRNDYSYWLSTDKPMPSNMISITGVELASYISRCSVCEATTNVIAIHSQTTVTPN
CPQNWESLWTGYSFVMQTGAGAEGSSQPLVSPGSCLERFRQVPFIECHGKGTCNYYPDSY
SYWLGSVNHSNMFSKPVPQTVKGPSLQTVISRCRVCRKRWPPGSSESRGDV
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggccagcggctatagttcctctcatcctgcttgcggtgatgctgatgggcact
ggagccaaaaattgtgtctgcagtgggaagtcaagatgccactgtccaggagtaaaaggc
agcaggggagacaaaggttttccaggcgaaccaggccccccaggaccacaaggtcgtcca
ggatcagctggccacgctgggcccataggcccaaagggcaacactgggcctgatgggcct
gcaggaccaaaaggcaacccgggccctgatggaaaagaaggatttgctgggtctcatggt
ttaccgggtgttccaggtttacaaggacctccaggaccccctggggccccaggatgcaat
ggaacagatggagaagatggacttcctggtgttcccggtgcccatggtttagatggacaa
ccaggagctccaggaccgcctggacctaagggggattctttggtattagtggatccaatg
ccaggaccaaaggggcttccggggaggaaaggcgagctgggacttcaaggttttgcaggg
gatcctggacctccaggggatcctggacctagaggatcatttgggttgatcggccgtgca
ggtgcacaaggatctaagggtcaagaaggcataggtggaatgccgggacctcgtggacca
aaggggaaccaaggaccacgaggcccaccgggccctccaggtcgtgttaaagagttttta
agtgggtctcaagtgttaaagggcacaaaaggagacaaaggaaatgcgggagaaaaaggg
tgcaagggtgaaccaggagacacgtttgatggttattacttcaaaggagaaaaaggagac
caaggatctgtgggccaagagggaaagccaggaaaggatggtgatcttggagaacctgga
cacaggggaaggcctggccctacaggtgcaacagggtatcagggcacacctggagacaag
ggggaaaagggaaatagaggtttgcctggttcacctggatcgatagggtttgtgcatgag
ccactcaaaggatttcgtggagaacctggtagcccaggtctaccgggacctcctggccct
caaggtgttgtggggtttcccggacctgctggacttccaggccatgcgactggatttttc
ctgccaggcccacaaggtcccagtggcttcccaggccccaaaggagatcctggagatcct
gggagtgtaaatgttggacgtcctggtccagctggtgatcctggtgatcaagggccatct
ggggacataggagaacctggaccaccaggagacagaaccaacagaatcaccaaggccccc
ccaggaataaagggcatgagcggtattgctggaccacaaggatatgacgggctaattgga
atcaaaggacagaaaggggagccctgtaatgagtgcactggacaaggacccacaggacca
cctggcccacctggtccacctggcagccctggttacaatcaaggaccaggacctaaaggt
gatccaggctttccaggacctagaggtctacttggaagaccaggtcctcttggtgaaaca
ggattacaaggccctccaggacaaaagggagatccatatcattatagcaaccatgggata
aagggagaaaggggaagcccaggaatacctggcaggcctggtgcagatggctaccctggg
tctcctgggttaccagggcacaaaggcaatcaaggctttccaggggatacgaatctcttt
ccagggcatgatggagacaagggttttaggggtcaaccagggcctgcaggcagtccagga
ccagttggggagcctgggagagtgggatatgggcctcttggacttgaaggaattaagggg
gattctggggttcctgggttgcctggacagcctggaattccaggtccaaaaggagaacct
ggccatattcatggcaaaggatttcctggaccaccagggtttaaaggtcaacctggttct
cctggaatcccaggggatcaaggaacctcgggaccaccaggatcaccaggtttagcagga
gaaaaaggagaaagaggtgatgtgtcatggcctggaagtttaggaatcccaggacctaaa
ggtgacaaagggcagccagggctcccaggccttccaggcagaggtcttcctggtcaacca
ggcacaccaggccttcctggtctccctggacctcagggtgaaagcggccttggatatcct
ggccccccaggccttcctgggcttccaggtgaaactggcattcaggggcctatgggagat
ccagggtcccctggtctacctggggtcccaggacttactggcaatcctggttttccagga
gaaaaaggaaataaaggattccaaggacccccaggactacctggtaccaaagatttatgt
atgggtttacctggaccaatgggaccaccaggaccagatggctattcgggacatccagga
ccgaatggctcccctggagagaaaggaaatgttggtgggccagggtttggtcgtcctggt
cccccaggtgagcctggtttccttggaccatcaatcccaggtctaagtggaatttctgga
caaaagggcatcaagggacaaaatggcctccctggtctaccagggttaaaaggagaccca
gggccagatggcctaccaggatatggaccagaagggttgcctggaatcatgggaccacca
ggacaaataggttcccagggaccagatggagccagagggccccagggtccatcaggaata
caaggtgacctaggtcccaaaggtcctaaaggacgttcaccaacaccaccagctgatctt
ataggtcccccaggggaagctggtgatacaggttaccctggtctaggtggtcctccagga
gaaactggaagcactggctcaaaaggacagagaggacaagggggagtgcctgggtctcca
ggattaagaggtgccccgggtgatcccggtagagatgatcctttatcaaaaggtagccaa
ggacctgatggagctccaggagacccaggagtaatagggcctcttggtccgaaaggacta
aaaggaaatccaggagtccctggagagccaggtccaaatggcgcaccaggtttaaagggt
tacaaaggacacaaaggagaaccagacgactacagatatggaccacctggaccacatggt
caaaagggtgagaagggttcaattaatactcatataatgaaaggccagaaaggagaacct
ggcttaagtggactgcttggccaaccaggaaaccatggatcaaaaggaaacaaaggacct
cctggggaaaatggcttgccaggctatcaggggcctataggatcaaacggacctccagga
ggcaaaggacatcggggacctattggacatccaggtgaccctgggccaccaggtgtcagt
ggtactgtagggcctaaaggaaaccagggtaaagatgggatccctggattaccaggggaa
aagggggacactgcactagttgatgggaaaacaggaaggcggggtgacactggtcagcca
ggttcccctggagatcctgggtctcctggctttcctggaacaggcagtcctggattgatt
ggggacaaaggatttccgggtccatctggggtctttggtccaagaggaccaccgggacat
acaggagaatgtgtccctgggcctaaaggagccaggggccctcctgggaatgttggaaga
ccaggtccccctggctttcctggtcccccaggtccaactgtgcctggattaaaaggagat
agaggagaaccaggtcctacaggaaacccaggctatagcggatcccgtggagaaccgggc
tctcatggacctcctggtgaaagaggcagaccaggagaccaaggaccaagaggggatccc
ggccgtcatggaagccaagggccggctggggacagaggagacccaggaaccatcccagga
cttcctggtgcacctggagccaaaggccctcctggaccacctggccgcacaggtcaacca
ggatttgtcaggttctcatatgaaccaggacctcctggctttcttggtccctctggcaac
cggggagccccaggtagcactggaccatcaggaccaccaggggttccaggtgcaccaggt
gttaaaggagctcaaggttctagcccaactggattgattggatttccaggaaacaaagga
gataaaggacgagcaggactcctaggtccaaatgggacacctggatatccaggccggaaa
ggtattcaaggtttgcctggcaggcttgtttcggggtttgttgacagttttctggtagct
agacacagtcagagtgtctatgtccccgaatgccctcaaggcaccagcctcatttactca
ggatactccttcctcttcatcaatggaaatgagagagcacacggccaggaccttggcacc
atgggaagctgcctccctcgtttctcccccatgcctttcctgttctgtgacacagaaacg
acctgtcgctatgcttcacgtaatgactactcctactggttgtctactgacaagcctatg
cctagcaacatgatttccattacaggagttgaactggcctcctacatcagcaggtgctcg
gtttgtgaggctactaccaatgtaatagccatccacagccagacaaccgtgacacctaat
tgtccccaaaactgggagtcgctatggactggatactcatttgtcatgcaaacgggagct
ggtgctgaaggctcctctcagccgctggtttcccctggttcgtgtctggagcgtttccgc
caagtgcccttcattgagtgccacggcaaggggacttgtaactactaccccgattcctac
agttattggctgggctctgttaaccacagcaacatgttcagtaaacctgttcctcagaca
gtaaagggaccttctctacaaacagtcatcagccgttgtcgggtttgcaggaaacgatgg
cctcctggctcaagtgaaagccgcggagatgtttaa
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integrated database retrieval system
