Betta splendens (Siamese fighting fish): 114843979
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Entry
114843979 CDS
T08231
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
bspl
Betta splendens (Siamese fighting fish)
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bspl03000
]
114843979 (rc3h1b)
04121 Ubiquitin system [BR:
bspl04121
]
114843979 (rc3h1b)
Transcription factors [BR:
bspl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
114843979 (rc3h1b)
Ubiquitin system [BR:
bspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114843979 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
zf-RING_10
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
114843979
NCBI-ProteinID:
XP_028986773
UniProt:
A0A6P7L171
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All DBs
Position
17:complement(9015886..9028837)
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AA seq
1146 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALINSPEDSQHYEEARQCVDELALYLKPLSNTRGVG
LSSTTQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQVGLDLKINGPPQH
SKYKTYMCRDMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGPGGLMPDEGLPL
DVTVTRKTSPLPNGSVAPSIPQLIPRGTDTVSFGLLPKSVKMEGGSPSAPGSPPDVLDQV
SKPGMALPHHAMAHPRMPADHLSGVKHMPVVPRGSPVYPQAQLPEMCYDARPPPSASQYE
PSQYPTGYPYQHSYVTQDYIRNPPVSNEPGPPYQDPYPGYGPPERPYQPPHSGQTYSYPH
PPHYDRGRHGPYSVPPPPPQPYQSQRDSLVRMSPAPLDVAPQTVGQANSLYHQEPLARDR
YAPDGYYPPSAQAPPIRSYPRGPPYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAAS
PTLSHPFPSDYPPEYGDESSKTKCRKADYAGQYSPWSCETIGSYIGNTKDPKPKDVMVAG
TMEMMNVETKGLRESSLDAPRRSTEVKDDDPIIPFGPQPYVSRFGAISRTSKTGYQSTGP
VHAMASTSQNPNSKHMAMPAEYNYGSHGGWGGTSYPSHQTASSSQGHFERLTMATTEREQ
LKIELQKVNQQITQQTQMHSMEAGSNSLLLSREASALAGQPVQPSQSQAAAAAAAATAQQ
QPKWPAGGSSTATVSSEQLSLELHQVEREIGKRTREMAMQENQVVHDVQQYKIKPAENGQ
PEHKTQLEEISLALGEVSNGSSGLQESAVGGSVLTLTNKTSALSLCSDQGATGSEVQKNG
VVHSCS
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagccccacaatggacagagttcctgctgtgcccaatctgcacgcagaca
tttgaggagactgttcggcggcccataagtttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttacaccgtaaggcctgtccctttgaccagacagccataagcacagac
attgagcagctacctgtcaacacagccctgttacagctggtgggaggccaggttcctaag
gctcagcctgttgccttgattaacagtccagaggattctcaacattatgaggaggccaga
cagtgtgtggacgagctggccctttacctcaaaccccttagcaacactcgaggtgtgggt
cttagcagtacgactcagagcatgctgagtcgacccatgcagaggaaactggtaactctg
gtccactgccagctggttgaggaggaaggccgtgttagagcaatgagagctgcacgctct
ctgggtgagcgaactgtcactgaactgattttgcagcatcagaatccccagcagctctcc
tccaatttgtgggctgccgtcagagcacgaggatgccagtttctaggcccagccatgcag
gaggaagctctaaagttggtccttcttgcactagaagatggctcagctttgtccaggaag
gtgttggttctttttgtagtccagaggcttgagccacgctttccacaggcctcaaaaact
agcataggccatgtggtacaactcctctacagggcatcctgttttaaggtgaccaaacgt
gatgaagattcatccctgatgcagctgaaagaggagtttcgtacttacgaggccctgcgg
cgtgagcatgactctcagattgttcagattgccatggaaggtggcctgcgcatcgcccct
gaccagtggtcttcactgttgtatggagatcagtctcataagtcccacatgcagtctatt
atagataagctgcagacaccagcatcttttgctcagagtgtccaggagctgacgattgca
ctgcagaggactggtgacccagccaatctcaacaggctgcggcctcacctagagcttctg
gccaacattgatcccagcccagatgctccacctcctacttgggagcaacttgaaaagggg
ttggtagcagtaaaaacagtggtgcatggcttggtggacttcatccagaaccacagcaag
aaaggagctgatcctcaacaggttggtttggacctcaaaataaatgggcctcctcagcac
agcaagtacaagacatacatgtgtcgtgacatgaagcaaaaaggaggctgtcctcgtgga
gctagctgcaccttcgctcactctcaggaagaactggagaagtatcgtaagatgaataaa
cgtctggcagctcgcctccctggcccaggagggctgatgcctgatgagggccttccactt
gatgtaacagtgacccggaagacgtcccctcttcccaatggcagtgttgctccttctata
ccccagcttattcctcgtggcacagatacagtctcatttggactgctgcccaaatctgtc
aagatggagggagggagtcccagtgccccaggatcacctcctgatgtactggaccaagtg
tccaaacctggcatggctctgccacatcatgccatggcccatccaaggatgccagcagac
cacctctctggggtaaaacacatgcctgtggtgcccagaggttccccagtgtaccctcag
gcacagctcccagagatgtgctatgatgctcgcccaccaccttctgcctctcagtatgag
ccctctcaataccccactgggtacccctaccaacattcgtatgttactcaggattacatc
cgtaaccctcctgtctccaatgagccagggcccccatatcaggacccctatcctggctat
ggccctccagaacgtccctaccagcctcctcactctggtcaaacctactcctaccctcac
cctccccactatgaccgaggtcgccatgggccctactctgtcccgccacctcccccacag
ccttaccaatcccagagggatagcctggttagaatgagtcccgcacctctggatgttgcc
ccacaaacagtagggcaggctaactcgctttaccaccaggagccccttgcacgggataga
tacgcaccagatggctactatccaccaagtgctcaggctccacccattaggagttatccc
aggggaccaccttacagtggttcacagcctagcctagactatctgcatcggcgacgccag
gagctattatctcagctggaggaaaggaaggtcatctcccctccaccttttgctgcctca
ccaacactttctcatcccttcccaagtgactaccctcctgagtacggtgatgagagctcc
aaaaccaaatgcagaaaagctgattatgctgggcagtactccccatggtcttgtgaaact
attggctcatacattggtaatactaaggatcccaaacccaaagatgttatggttgctggt
accatggagatgatgaatgtggagactaaaggtttgagggagtcatcactggatgctcca
cggagaagtacagaagtcaaggatgatgatccgattatcccatttggccctcagccctac
gtgtcacgctttggtgccatctcccgcacttcaaagacgggctaccagagcacgggcccc
gtgcacgctatggcctccacttcccagaatccaaattctaaacatatggccatgccagca
gaatacaattatggaagtcatggaggatggggtggaacttcatacccctcccaccagact
gcctcctcctctcagggacactttgagcgcctaacaatggcaaccacagagcgagaacag
ttaaagattgagttgcaaaaagtcaaccagcaaatcacacagcagacacagatgcatagc
atggaggctggaagtaactctttactgttgtcaagagaggctagtgctttggcaggtcag
cctgtgcagcccagccagagccaagcagcagcagcagcagcagcagcaactgcccagcag
caacccaagtggccagcaggtggctcaagtacagcaacagtttccagtgaacagctaagc
ctggagctccatcaggtagagagagaaatcggaaagagaacccgtgagatggctatgcag
gaaaaccaagtagtgcatgatgttcagcagtacaagattaaacctgcagagaatggacaa
ccagagcataagacgcagcttgaggaaatctccttggcccttggtgaggtgtcaaatggc
tccagcggtctgcaagaaagtgcagtgggtggatctgtgctgacactgaccaataagacg
tcagcattgagcctgtgttcggatcaaggtgccactggttcagaggtgcagaagaatggt
gttgtccattcctgctcttag
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