Betta splendens (Siamese fighting fish): 114844311
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Entry
114844311 CDS
T08231
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114844311 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114844311 (smg7)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
114844311 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
114844311 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
2H-SAK
zf-AD
Motif
Other DBs
NCBI-GeneID:
114844311
NCBI-ProteinID:
XP_028987415
UniProt:
A0A6P7L0J6
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All DBs
Position
17:16596362..16607368
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AA seq
1194 aa
AA seq
DB search
MSLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQSKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSSTSAIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
TKWSVSDFIKAFIKFHGHVYLSKSLDKLDSLREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDLAADGSEHIYSSDQQLSWFQLLGLFMSFLGVLCSRVLLNKNKGEEIMGECP
LPAVKVSLDWFRLRPSVFHEAAINKRQYVWPWLVSILNSFQPKEDDVSCSSLTPLPEEFE
LQGFLALRPALRSLDFTKGHQGVLVDRDGLPVHARHQRLVVLGKWVADNNPQLIQYRVSE
DGLLVFHTDIPEQAIEELQDKEAPVLQESSNGEQTTNDGSNSGLKSVLSAGKTQSSWPDG
SDRPVVTFKENIKPREQSRDPRNHLQKDSKERRDFIKGNGAAGKAELKRDGKRKSELKKT
GHEKITDAGKQVKAQTELRKTPVSEAKKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRPGF
PPSAYVIPPSVAFPGLPVNPGFAFSTGVSVPGPFLQPAVHTQAGTQVQAGKPSHIPYSQQ
RPSGPGPGQVPGSSGQGPGPMNQGPSQVQQPQAQPPSQQALQQSVQLQVQAMGQQQQSPT
KPVQQVGLGKSPPHHPGLQQYMQVQDQPAQMWSQAQAALQKMSTMQMPMKHPQQQQQQTF
YMAAQDPLKLYEHQSQLSNMDKKIKYPDVKMQDFYWEPPYRMGDGLAVMADRMKRPAPGG
MCSDQDASIRPRGPPFEDNKSSPLLPPDLLKTLADFEEEEELVFTKPPDFFQALAGPLST
APGPNIFLPNQSRMESGAEVVSQTSSLLPMSGFPMQEYNQNSIFSQAYGKNLPPSSKSDA
PMMHQEPSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGAVPFSN
FGPIGTPDSRDRRVVDRWKADKTAAVSGFGLDYLPPAASSGATDASWHQTGPTGSSWTNQ
ESPMEESSSTVLLDSFKSIWSSSMMQPGPSALEQLLLQQKQKQQRGHGAMNPPH
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgagcctctgcgcccagtacctacggcaggcagaggccctgaaggcggacatgacagat
tcaaaactgggggctgcagaggtgtggacatctcggcaggccctgcaggacctctaccag
aagatgctagtcactgacctggagtacgctctggacaagaaggtggagcaagacctatgg
aatcatgcgtttaagaaccagatcaccacactgcagagccagtcaaagaaccgagccaac
cccaaccgcagcgaagtccaagccaacctgtccctgttcctggaagcagctagtggcttc
tacacacagctcttgcaggagctttgcaccgtgttcaacgtggacctgccatgtcgcgtc
aaatcgtctcagcttggcatcatcagcaataaacagagcagcaccagtgccatcgtcacc
ccacagcccagctcctgctcctacatatgtcagcactgcctcgtccacctcggagacata
gcacgttaccgtaatcagaccagccaggcggagtcgtactaccgacacgctgctcagctg
gttccatcaaacggtcagccttacaaccagctggccatcctggcctcctctaaaggagac
cacctcaccactatcttctactactgccgcagcatcgcagtcaagtttcccttcccagcg
gcctccaccaacctgcagaaggcgctgtccaaggctctggagagccgcgatgaagtgaag
accaagtggagtgtatctgattttatcaaggccttcatcaagtttcatggtcatgtttat
ctgagtaagagtctggacaaactggacagtctgagagagaaactggaggagcagtttcag
cggctgatcctgcagaaagccttcagctctcagcagctggtccacatcactgtcatcaac
ctgtttgagctccaccacctcagagacctggcggctgacggcagtgagcacatctacagc
agtgatcagcagctcagctggttccagctgcttggactcttcatgtcgtttctgggcgtc
ctgtgcagccgtgtcctgctcaacaagaacaagggggaggagatcatgggggagtgtcct
ctgccagccgtcaaagtttctctggactggtttaggctgcggcccagcgtgttccacgag
gccgctatcaacaagcggcagtatgtttggccctggttggtgtccatcctcaacagtttt
cagcccaaggaggacgacgtgtcctgttcctcattgacgcccttaccggaggagtttgaa
ctccagggctttttggctctgcgacctgctttgaggtctctggacttcaccaaaggtcac
cagggcgtcctggtggacagagacgggctaccagtccacgcgcgacaccagagactggtc
gttctgggcaaatgggtggctgacaacaatccgcagctgattcagtacagagtgagtgag
gacggcctccttgttttccacactgacattccagagcaggcaattgaagagctgcaggac
aaagaggcgcctgttctgcaggaatcgtccaatggagaacagaccaccaacgacggcagc
aactctggactgaagtcagtgctgtcagcgggtaagacccagagctcatggcccgatggc
agcgatcgacccgttgtcaccttcaaagagaacattaaaccccgggaacagagccgcgac
ccgaggaaccaccttcagaaggacagcaaggagcgcagagactttataaaaggcaacggt
gctgctgggaaagcagagctgaagagagacgggaagaggaagagtgagctgaagaaaacg
ggtcatgagaaaattacagacgctggaaaacaggtgaaggcacagacggagctaaggaag
actccagtgtctgaggccaagaagactccagtcactcaaactcaaaccacctgctcctcc
cagttcatccccattcatcatcctggagcttttcctcctctgcccagcaggcctgggttt
ccaccctctgcctatgtgatccctccttctgtggcgtttccagggctcccagtgaatcca
ggctttgccttctccactggagtctctgttcctggacctttccttcagcctgctgtccac
acccaggctggcacacaggtccaggctggaaagccgtcccacattccctacagtcagcag
agaccctctggtcctggtcctggccaggtcccagggtcctcgggtcagggcccagggccc
atgaaccagggcccctcccaggttcagcagccccaggcccagccaccctctcaacaggcc
ttgcagcaatcagtccagttacaggtgcaggcgatgggccagcagcagcagtccccgacc
aaaccggtgcagcaggtcgggctgggaaagagtccccctcaccacccaggactgcagcag
tatatgcaggtccaggatcagccggctcagatgtggagccaggcacaggcagcgctacag
aagatgtccaccatgcagatgccaatgaagcatcctcagcagcagcagcagcagaccttc
tacatggcagctcaggatcctctcaagctgtacgagcaccagtcacagctgtccaacatg
gacaagaagattaagtatcccgacgtcaagatgcaggacttttactgggagcccccctac
aggatgggagatggtctggctgtgatggcagacaggatgaagaggcctgcgccgggaggc
atgtgttcagaccaggatgcttccatcaggccccgaggacccccgtttgaggacaacaag
agctcgcctcttctacctccagacctgttaaaaactctagcagattttgaggaggaggaa
gagctcgtctttactaagcctcctgatttcttccaggccttggctgggcctcttagcact
gctcctggaccaaacatatttctgccaaaccagagcaggatggagagcggtgccgaggtg
gtcagtcagacgtcttcactcctgcccatgtctggcttccccatgcaggagtacaaccag
aacagcatcttcagtcaggcctatggcaagaacctgcctcccagctccaagtctgacgct
cccatgatgcaccaggagccgtccctctactccctgtttgaagggactccctggtccccc
tccctccctgccagctcagaccactccaccccagccagccagtccccccactcctccaac
cccagcagcctgccctcttcccctccaacgcacaaccatggagctgtgcccttttctaac
tttgggcccattggtaccccagacagccgggaccgcagggtggtggatcgctggaaggca
gacaagaccgcagcagtgagcggctttgggctggactacctgccacccgcagcctcctct
ggagctacagacgccagctggcaccagactggacccactgggagctcctggaccaatcag
gagtctccaatggaggagtcctcctccaccgtgctgctcgacagcttcaagtcgatctgg
tcgagctccatgatgcagccgggcccatcggcgctggagcaactgctcttgcagcagaag
cagaagcagcagcgaggtcatggtgccatgaaccccccccactga
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integrated database retrieval system
