Betta splendens (Siamese fighting fish): 114844823
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Entry
114844823 CDS
T08231
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03013
Nucleocytoplasmic transport
bspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114844823
03015 mRNA surveillance pathway
114844823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114844823
Enzymes [BR:
bspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114844823
5.6.2.5 RNA 5'-3' helicase
114844823
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114844823
mRNA cycle factors
Common to processing body (P body) and stress granule
114844823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
114844823
NCBI-ProteinID:
XP_028988293
UniProt:
A0A6P7L0Y6
LinkDB
All DBs
Position
17:complement(6471217..6481588)
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AA seq
1111 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEFDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGALQNGDDPVVKATQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKDNPTATLEDLEKPGVDEEPQRVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDCSSNGRSSNMYFQTHDQIGMIGTGPSPLTSMNI
PIPFNLVMPPIPPSGYMGQVNGPSTGRGGGTKGKAGGGGGSGTRGGRQRNRGNTGNHGGA
DRGHGGHMSGSQASQDLVSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEF
KSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctctcagactctcacgttcctggacacagaggag
accgagctgctgggagcggacacccagggctccgagttcgacttcaccgatttcacgctg
ccgagccagacgcagacgcaggggcagacccagagtcagctggacagccaggtgaatgga
cccgacggagcgctgcagaatggagacgatcctgtggtgaaagccacccagctgctggca
gagttgaactttgaggaggatgaggaggacacgtactacaccaaggaccttccggtgcac
gcctgcagttactgcggcattcacgatccggcctgcgtggtctactgcaacaccagcaaa
aagtggttctgtaatggccgtggaaacacatcgggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgaccctgcataaggacggacctctgggggaaactgttctg
gagtgctacaactgtggctgtcggaacgtgttcctgctgggcttcatccctgccaaggcg
gattcagtagtggtgttactatgcaggcagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcccagtggcagcctctcattcaggaccgctgcttcctgtcctgg
ctggtcaaaatcccctcggagcaggagcagctgagggcccgtcagatcacggcccagcag
atcaacaagctggaggagctttggaaggacaaccccactgcaaccttggaggatctggag
aagcctggcgtggatgaggagccccaacgtgtcctgcttcgctatgaggatgcctatcag
taccagaacatcttcggtcctcttgtaaagctggaagctgactatgataagaaactcaaa
gagtctcagactcaagacaacattacggtcagatgggacttgggactaaataaaaaaaga
attgcatattttactcttcccaagacagattcagatatgcggttgatgcagggggatgaa
atttgcctgagatacaaaggagacttggctcctccatggaaaggcatagggcatgtcatt
aaagtccccgacaactatggtgatgagattgccatagagttgaggagcagtgctggggct
ccagtggagatccctcataactttcaggtggactttgtatggaagtctacttcctttgac
agaatgcaaagtgctctcaagacgtttgctgttgatgagacctccgtgtctggctacatt
taccacaaactgctaggacacgaggtcgaggacgtggtcatcaagtgccaactgcccaaa
cgcttcactgctcagggcctacccgatctgaaccactctcaggtgtatgcagttaagacg
gtgctgcagcgtccgctcagtctgatccagggtcctcctggcacaggaaagacagtgacc
tctgctacaattgtctaccacctggctagacagggcaatggaccggtgctggtatgtgct
cccagtaacattgcggtcgaccagctaacagaaaagatccaccagactggacttaaggtg
gtcaggctgtgtgccaagagcagggaggccattgactcgcctgtttcttttttggctctg
cacaaccagacccgtaacatggacagcatgccggagctccaaaagctccagcagttgaag
gatgagaccggagagctgtcctcctccgacgaaaaacgctaccgggctctgaggcgcaca
gctgagagggagctgcttatgaatgctgacgtgatttgctgcacttgtgttggagcaggg
gatcctcgtctggctaagatgcagttccgctcaattctgattgatgaaagcactcaggcc
actgaaccagagtgtatggtgccggttgttctaggggccaagcagttgattctggtgggt
gatcattgccagctgggtcctgtggtgatgtgtaaaaaggctgctaaagcaggcctgtcg
cagtctctgtttgagcgtctggttgttttggggatacggccgatccgcctgcaggtccag
taccgaatgcacccagccctcagcgccttcccctccaacatcttctacgaaggctctctg
cagaatggagttactgctggcgaccgtgtgaagaaaggctttgacttccagtggccgcag
cctgacaagccaatgttcttttatgtcacgcaaggccaagaagaaatcgccagctctgga
acatcctatctcaacaggaccgaagcagctaatgttgaaaagatcaccacaaggttgctg
aaggctggagcaaagcctgaccagattggcatcattactccctatgagggtcagaggtcc
tacctggtccagtacatgcagttcagtggctccttacataccaaactctaccaggaggtg
gagatagccagtgtggatgcatttcagggcagagagaaagatttcatcatactgtcctgt
gtgagagccaatgagcaccaaggcattggcttcctcaacgaccccaggcgtctgaatgtt
gcacttacgagggccagatatggtgtgatcattgtggggaatcccaaggccttgtccaag
cagcccctgtggaaccacctgctgaactactacaaggagcagaaggtcctggtggaaggc
cccctcaacaacctgagggagagcctcatgcagttcagcaagccgcgcaagctggtcaac
accatcaaccctggcgggcgattcatgagcacggcgatgtatgacgccagggaggccctc
attcctggatctgtttatgattgcagtagcaatgggcgttcatccaacatgtacttccag
acccatgaccagatcggtatgattggcacaggccccagtcccttgacttctatgaacatc
cccatcccgtttaaccttgtgatgccacccatacctccttctgggtacatgggacaggtg
aatgggcccagtacaggtcgtggaggaggtacgaagggcaaggccggaggcggaggaggc
agcgggacccgaggtggtcgtcaaagaaaccgcggcaacacgggcaaccatggtggagcg
gaccgtgggcatggaggacacatgagcggcagccaggccagccaggacctcgtctcccag
ccgttctctcaggggcctctgacacagggctacatcaatatgagccagccgtcacagatg
agtcagcctgggctctctcagcctgagctctcccaggacagttaccttggagatgagttc
aagtctcagattgatgtggctttgtcccaggactccacctaccaaggggagcgggcttac
caacatggtggtgtgactggactgtcccagtactag
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