Betta splendens (Siamese fighting fish): 114847096
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Entry
114847096 CDS
T08231
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04382
Cornified envelope formation
bspl04510
Focal adhesion
bspl04512
ECM-receptor interaction
bspl04518
Integrin signaling
bspl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114847096 (col4a2)
04518 Integrin signaling
114847096 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114847096 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114847096 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114847096 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bspl04147
]
114847096 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
bspl00536
]
114847096 (col4a2)
Exosome [BR:
bspl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114847096 (col4a2)
Glycosaminoglycan binding proteins [BR:
bspl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114847096 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114847096
NCBI-ProteinID:
XP_028992298
UniProt:
A0A6P7LDN6
LinkDB
All DBs
Position
21:complement(6779887..6810569)
Genome browser
AA seq
1666 aa
AA seq
DB search
MRGQHDPRLPLLCLALAVLLSGAHAGVKKSAGPCGGRDCSGGCQCYPEKGARGSPGPLGL
QGPQGPPGRPGDPGIQGPKGHKGERGHGGHLGPKGSVGMTGVPGFSGNDGIPGHPGQAGN
RGKPGADGCNGTQGEPGFPGRSSANGRPGLPGQAGRKGEKGDSLDVQVYLERFRGDPGTP
GADGIFGPPGQPGFHGNRGIPGPKGPQGIPGPKGRKGEMVNYIKGDKGDIGDIGPPGEPG
NATYQHTLPPDNSQGRPGEIGLKGDRGDDADNKGETGVPGFVGERGPPGRNGSPGPKGQS
GEDGLRGSKGVKGVRGEPGELISSGSYLEAGPPGPRGNRGPQGERGQVGDKGFLGPPGSS
ASESQQQQQEYEFFGPFGVDGDQGEKGLQGEAGIPAFMPGPPGAKGRPGFQGPPGRKQTW
SDVFKGISGSRGRPGNAGPKGLKGDHGECQCTLEGSNLGPPGPAGDPGVSGMVGEFGPRG
DVGDDGLQGNDGLPGPRGSEGFPGPKGQKGAISVPKEKGYPGDPGPAGRAGWPGAPGAAG
RQGSPGVPGSRGFPGEGPTGDHGDKGFQGLPGQPGTAGLRGPPGAEFVGLKGQPGLPGDD
GLAGYTGVPGTPGSPGGCIPAGDGEQVALTGACIMTPGPPGTLGLPGPSGSIGSPGFQGP
QGPRGKDGVLGEKGEKGDQGTGGSPGPPGFPGPRGNLGIPGGKGSVGEPGLPGLFGRHGE
QGEKGIHGDVLGALNGPRGDPGLQGLQGDKGLYGDEGQQGFSGTVGMPGMIGFKGERGSL
GLQGEEGRLGPAGKHGYPGDHGKTGPPGPHGFTGEPGFTGERGTKGEQGPPGSVGLKGMP
GEYGDIGATGEFGSTGQAGLTGADGRLGLPGMKGYKGLSGMAGFKGMTGVSGVKGYSGLK
GESGVPGEVGPKGMMGESGEKGDRGLMGPPGKKPEFTGKVKTEMKGAKGEPGPKGQHGFT
GPRGPKGSDGVPGTKGRDGIPGNPSIEKGHQGDTGPQGLPGIKGMPGLTGNRGITGFEGM
SGTKGNRGGSGAYGASGEKGNKGPKGDKGLRMDVPGKPGLRGEDGFEGEPGHTGLTGKTG
DNGTRGFEGITGKKGESGDPGILGHPGLDGQKGNPGFQGQKGFTGAPGDKGNPGLPGFPG
DKGFTGPKGLYGLHGLKGQKGAPGTPGVDVTGPTGETGAKGDRGDSGDPNNQPGFPGTSG
SKGLQGPSGDFGQPGPAGFRGPVGPDGTPDRQGPSGDPGFPGPKGHHGTPGFRGSPGEDA
LPAEKGVPGVRGFPGSPGVKGFKGDRGPIGYRGADGVFGKKGVKGEQGMMGLPGVNGDKG
ERGLVGPKGTTGPPGFPGPTGDRGPLPLPIRIPGERGPQGPQGITGPKGFKGEPGPHGPP
GDKGFMGPIGQKGMPGIAGTPGIPGFRGDVGHLGHPGLQGMEGRRGNTGNPGLPGMPGRS
VSVGYLLVKHSQSEQTPMCPVGMSKLWEGYSLLYFEGQEKAHNQDLGLAGSCLPRFSTMP
FLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEEEIKPYISRCSVCEAPSVAIAVHSQ
DITIPQCPSGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLEDFRTTPFIECNGAKGTC
HYFANKYSFWLTSLDQSFHPDPSSGTLKAGQLLSRISRCQVCMKNL
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgcgtggacaacacgacccgaggctgccgctgctctgcctcgcgctcgccgtcctcctg
tcaggagcgcacgcgggtgtgaagaagagcgccggcccctgcggaggaagagactgcagc
ggcggctgccagtgctacccggagaagggcgccaggggttctcctgggcctctcggcctt
caggggccacaggggcctccagggagaccaggcgatccaggcatccaaggaccaaagggg
cacaaaggtgaacgtggccatggtggccacctgggtcccaaaggaagtgtggggatgacg
ggcgttcctgggttttctggaaatgatggtattccgggccacccaggacaggctgggaac
agagggaaaccgggtgcagacggctgtaatggcacacagggagagccaggcttccccggg
cgaagcagcgctaatggcagacctggattacctggacaagcaggcaggaaaggagagaaa
ggagactcgctggatgtgcaggtgtacctcgaacgtttcaggggggatccaggaacaccg
ggggccgatggaatatttgggcctccaggtcagccggggtttcatggtaacagaggcatt
ccaggaccaaagggtccccaagggattccaggtcccaaaggacgaaagggtgaaatggtt
aattatattaaaggagacaaaggggacattggggacatcggaccacctggagagcctgga
aatgctacatatcaacatactctgccacccgacaactcacagggccgtcctggagagata
ggactgaagggagacagaggagatgatgcggacaataaaggagaaactggcgtacctgga
ttcgttggagagcgaggtccgcctggtagaaacgggagtcctggaccaaaagggcaaagt
ggagaggacggactcagaggcagcaaaggagtaaagggagtcagaggtgaaccaggagag
ctaatttcatctggatcctatttagaggctggaccccctggtcctcgtggtaaccggggt
ccccagggagagaggggccaagtaggcgataaaggtttccttggacccccaggaagctct
gcttctgaatcacaacaacaacaacaagagtacgagttctttgggccatttggtgtagat
ggggatcagggagagaaaggcttacagggggaagcaggaattcctgctttcatgccaggt
cccccaggtgccaaagggcgtcctgggttccaaggccctccaggacgcaagcaaacatgg
agtgatgtattcaaggggatttcaggctcaaggggaagacctggcaatgcaggccctaaa
ggactgaaaggtgatcacggtgaatgtcagtgcactctggaaggctcaaatctgggccca
cctggccctgctggggatcctggtgtttctggaatggttggagaatttggtccacgtggc
gatgtaggggacgatggtctccaaggaaacgacgggctacctggacctcgtggcagtgaa
ggttttccaggccccaaaggccaaaagggggcgataagtgtacccaaagagaaaggatat
ccaggagacccaggacctgctggacgagctgggtggccaggagcaccaggtgcagccggc
cgacagggttcgcctggcgtccctgggtcccggggttttccaggagaaggtcccacgggg
gatcatggagacaaaggcttccagggcctgcccggtcagcctggtacagctgggttgagg
ggaccaccaggtgcagagtttgtgggactcaaaggccagcctggtttacctggagatgac
ggtctcgcaggctacactggagttccaggaacacctggaagcccaggtggctgtattcca
gcaggagatggggaacaggtggctttaacaggtgcttgtataatgactcctggacctcct
gggacacttggactccctggaccgagtggctcaataggttctccaggttttcaaggacca
cagggtccacggggtaaagacggagtactcggagaaaaaggagaaaaaggagatcaaggc
acaggtggatctcccggtccaccaggttttcctggtccacgtggaaaccttggtattcct
ggtggaaaaggttcagtaggagaacctggtttgcctggtctttttggtcggcatggagaa
caaggtgagaagggtattcatggagatgtcttgggggctttgaatggaccacgtggtgac
cctggcctgcaaggacttcaaggggacaaagggctgtatggtgatgaaggacaacaaggc
ttttcaggaacggttggcatgcctggtatgattggcttcaaaggtgagaggggctcttta
ggtctacagggggaggaaggtaggcttggaccagcaggcaaacacggttaccctggtgac
catggaaaaacaggtccacctgggcctcatgggttcactggagagccaggttttactgga
gagaggggaacaaaaggagaacaaggtcctccaggttcagttgggttaaagggaatgccg
ggagagtatggtgatattggtgccactggggagtttggttcaacaggtcaggcaggactg
actggtgctgatggtcgcctcggacttccaggaatgaagggatacaaaggcctttctggc
atggcaggatttaagggtatgacaggtgtatctggtgtgaagggctacagcggactgaaa
ggagaatctggagttccaggcgaagttggcccaaaaggaatgatgggtgaaagtggagag
aaaggtgatcgtggtctgatgggtccgcctgggaagaaacctgaattcactggcaaggtg
aaaacagaaatgaaaggtgccaaaggagagcctggaccaaaaggacaacacggtttcact
ggaccaagaggtcctaaaggctcagacggtgtaccgggcactaaaggacgtgatggtatt
cctgggaaccccagcattgagaaaggtcaccaaggagatacaggtccacaggggctgcct
gggattaaaggaatgccaggcctaactggaaatcgaggaattaccggttttgaaggaatg
agtggcacaaagggaaatagaggaggctctggtgcttatggtgcatcaggagaaaaggga
aataagggacccaaaggcgataaaggccttcgtatggatgtcccaggaaaacctggatta
agaggagaggatggttttgaaggggagccaggtcacacaggactaactgggaagactggc
gacaatggtacacgtggttttgaaggtatcactgggaagaagggagagtcaggggatcca
ggaatattaggacacccaggtttagatggacaaaaaggaaatcctggtttccagggtcaa
aagggttttactggagctcctggtgataagggaaatcctggtttacctggcttcccagga
gacaaaggttttactggcccgaagggtctttatggtttacatggtctaaaaggacagaag
ggtgccccaggaaccccaggtgtggatgtgactggaccaactggagaaacaggagccaaa
ggagatagaggagacagcggcgaccccaacaaccagccaggttttccaggcacatcgggt
tcgaaaggcctacaaggaccctcaggtgattttggtcaacctggaccagcgggattccgt
ggtccggtgggacctgatgggacccctgacagacaaggacccagtggggatcctggtttt
ccaggccctaaaggacaccatggtacccctggattcagaggatcacctggtgaggatgct
cttcccgcagaaaagggtgtaccaggagtacgtggttttcctggaagccctggtgtaaaa
ggatttaaaggagatcgaggtccaattggatacagaggggccgatggtgtttttgggaaa
aaaggagtcaaaggagaacaaggcatgatgggattgcctggtgtaaatggtgacaaggga
gagagaggcctcgttggacccaaaggcaccactggacccccaggttttcctggacccaca
ggtgaccgaggtcctcttccacttcccatcagaattccaggggaaagaggcccccaaggc
ccacagggtataactggaccaaaagggtttaaaggggaaccaggaccacacggcccccct
ggggataaaggcttcatgggacccattggacagaagggcatgcctgggattgctggtaca
ccaggaatacctggattccgaggagatgttggacacttgggccacccgggtttacaaggc
atggaaggtcgccgtggtaacactgggaaccctggcttgcccgggatgcccggccgcagt
gtcagcgttggttatttgctggtgaaacacagccaatcagagcagacgcccatgtgtccc
gtgggcatgtctaaactgtgggaaggctacagtctgctgtactttgaaggccaggaaaag
gcccacaaccaagacctcggtttggccggttcctgcctcccgcggttcagcaccatgcct
ttcctctactgcaaccctggagacatttgctactatgccagcagaaatgacaagtcctat
tggctgtccacaactgcacctcttcctatgatgcctgtagaggaggaggagatcaaaccg
tacatcagccgctgctcagtgtgcgaggctccttccgtggccatagcagtccacagccag
gacatcaccatccctcagtgtccctcaggctggcgcagcttgtggattggctactccttc
ctcatgcacacggcagcgggagatgagggcggaggccagtcgctgtcctcgccgggctcc
tgcctggaggacttccgcacgacgccgttcatcgagtgtaacggggccaagggcacgtgc
cactactttgctaacaagtacagtttctggctcacgtcgctagatcagtcgttccacccc
gacccttcatcggggacgctgaaggcaggtcagctcttgtcacgcatcagccgctgccag
gtctgcatgaagaacttgtga
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integrated database retrieval system
