Betta splendens (Siamese fighting fish): 114847287
Help
Entry
114847287 CDS
T08231
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03015
mRNA surveillance pathway
bspl04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114847287 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
114847287 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bspl03021
]
114847287 (sympk)
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114847287 (sympk)
Transcription machinery [BR:
bspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114847287 (sympk)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
114847287 (sympk)
U7-dependent histone pre-mRNA processing factors
114847287 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
GCP_N_terminal
Motif
Other DBs
NCBI-GeneID:
114847287
NCBI-ProteinID:
XP_028992680
UniProt:
A0A6P7LEQ2
LinkDB
All DBs
Position
21:15739626..15748169
Genome browser
AA seq
1222 aa
AA seq
DB search
MDFTSEDGETPIPHTVDMTTSEKVVDLLNQAALIPTDEKLTVLKQVQELIINKDPSLLDN
FLDEMIAFQTDKSIEVKKFVIGFIEEACKRDNELLVRLIANLNMLLKDESVNVVKKAILT
LTQLYKVTLQWLVRFKVLSEVQEACWDLVTQMKEEVLTLLDSENDGVRTHSIKFTESLII
TLSPRTSDSDVPKRQEGDISLDKVPKDHSYIRYDVLCEEGKTALDKLLKFMVHPAISSIN
LTTALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHP
CSLEFQGQISTLLLDLGMPQSEITRSTPAPREPRKRPRHEQYTEGKKVKMEPTLIEDDED
KEEPAPLLIPKPAAVPAAQSAIDLTAEFLHPLLSPENVANLVLISMVYLPDVMPASFQAT
YTPVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDDACKEEENEDSIAKDLLIK
RKVPAVMLGQAISVVGGYPEKVPSPETPTVAKRLPEPILPTAQPKIAGASGRKKVFRLSD
VVQSLSENQIETLTSKAVKRILHSERAIAQSGMSHVRVKLLSRLVTQFEGMMKDDVLEFI
LEDIRTRSDLAFSLLYQEYNTYLSQLPTGLLDSYDHCLFTLLSGLQEKPEQRDGLFTKLV
LEAPIITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKV
RTTALAFLKRMYERDQLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEETVR
QCLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMSSPELLLLVENC
PKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKHEVIQALP
KLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNL
CFGEKNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIMKQV
WKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTSVFERCPEMREPLLHHVHSFTPHQQA
HIPASIMAVLEVHKKPEPKPVEPVMEKEIEPVDTPPALYLKETPTAAVTESETPVEQEPA
VIKDEEPMEQEEAEPVIEEESADTVSQPEVSGTSDTPSPQQEAAEEPMESSQPEPAELEE
LEKEAEADVTPPEDGSSSEDVE
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggactttacatctgaggacggggaaactcctatcccccacaccgtcgatatgaccacc
agtgaaaaggtggtggatctcctaaatcaggctgctttgatacccacagatgaaaaactt
actgtgctcaaacaggtccaggagctcatcattaacaaagatccatcgcttcttgacaat
ttcttggatgagatgattgcctttcagactgataagtcgattgaagtaaaaaagtttgtc
attggctttatagaggaagcatgtaaaagggacaatgaacttctggttcgactaatcgcc
aacctgaacatgttgctgaaggatgaaagtgtgaatgtggtgaagaaagctattcttaca
ctcacccagctctacaaagttactctacagtggttggtgcgcttcaaagtattgtcagag
gtgcaggaggcatgctgggatttagtcacacagatgaaggaggaggttcttaccttgttg
gactctgaaaatgatggagtgcgcactcactccatcaagttcacagaatcactaatcatc
actctgtcaccacggacgtcagactccgatgtccctaaacgacaagagggtgacatcagc
ttggacaaagttcccaaagatcactcgtacattagatatgatgtcctttgtgaagaggga
aagactgcactagacaaactgctgaagttcatggtccacccagccatttccagcatcaac
ctcactacagctctaggctcactggccactattgcccgtcagaggccaatgttcatgtca
gaggtggtgcaagcgtatgagacattacatgcaaacctgccgcccactctggctaagtct
caggtcagcagtgtgcgaaagaatctcaagctgcacctggtggcggtcctcaagcatcct
tgcagcctagagttccagggtcaaatcagcactctgctgctggacctgggcatgccccag
agtgaaataacacgatctacaccggcaccacgtgagccacgcaaacggccgcgccatgaa
cagtacacagagggaaaaaaggtcaaaatggagccgaccctcattgaagacgatgaggac
aaagaagagcctgctcctctcttgatccctaagccagctgctgttccagctgcacagtct
gccattgacctcacagctgaattcctgcacccactcctttcccctgagaatgtagctaac
ctggtcctaatcagtatggtgtatctgcctgatgtcatgccagcatccttccaagccacc
tacacacctgttgagtcagcaggcaccgacgcgcaaattaaacatctggccaggctgatg
gccacacagatgacggcagctgggattggtccaggacttgaacaatgcaaagccagagag
gacgatgcctgcaaagaggaagaaaatgaggactccattgctaaagacctactcatcaaa
cgcaaagttccagccgtgatgctgggccaagcgatctcagtggtcggcggttacccagaa
aaagttcccagccctgagactcctactgtagcaaagagacttcctgaacccatacttccg
accgcacaacccaaaattgctggggcaagtggaagaaaaaaagtgtttcgattatcagat
gttgtccagtctttgtctgaaaatcaaattgagacgttaacatctaaagcagtcaaacgc
atcctgcattcagagagagcgattgctcagagtggcatgtcccatgtccgagtcaagctc
ctgtcccggctggtgacacagttcgaagggatgatgaaagatgatgtgctggaatttatc
ctggaagacatcaggaccaggagcgatctggccttttctctgctgtaccaagagtacaac
acctacctcagccagctgcccactgggctgctagacagctacgaccactgtctcttcact
ctgctgtctggcctgcaggagaagcctgaacagagggatggtcttttcaccaaactagtg
ctagaggctcccattataaccgaatcagctttggaagtaatacgacgttactgtgaagat
gagtcccgcgtgtatttgggcatgacaacgctaaaggagctcatcgtcaaacggccctca
aggcagtttcagtacctgcatgtacttctggatctcagctcacatgagaaagagaaggta
cggaccactgctctggcttttctgaagcgcatgtatgagagagaccagctcagagactat
attgaaaagtttgcgctgaactacatgcagctccttgtccaccccaaccccccgtctctg
ctgtttggagctgacaaagatacagaagtggctgccccctggaccgaagagactgtcaga
cagtgtctgttcctctacctgtccctgctgccactcaatcaccgactggtccacgagctc
gcatctgtctacactgaggccatcgctgacataaaacgcagtgtgcttcgagccatagag
cagccgatccgtggaatggggatgagctctcctgagctgctgcttctggttgaaaactgt
ccaaaaggagcagaaactttagtcactcgctgtctgcacattttaacagacaaagtgcct
ccgtctccagagttggtggagagagtgcgagacctttaccacaaacgagttccggacgtt
cgtttcttaatcccagtcatcaatgggcttgaaaagcatgaagtgatccaggccctcccc
aagctcatcaaactcaacccaatagtcgttaaggaggtgtttaaccgtctgttaggaact
cagcacagtgaaggaagttcatctgtttcccctcttacaccaggagatcttcttatcgcc
ttacacaacatagactcaaccaaatgtgatatgaagtcaatcataaaagcaacgaacctg
tgcttcggggagaagaatgtgtacacatctgaggtgttagcagtggtaatgcagcagctg
atggagcagagccccctccccatgctgctcatgcgcaccgtcatccagtccctcaccatg
tatccccgactgggcggctttgtcatgaacattctatcccgtctcatcatgaagcaggtt
tggaaatatcctaaagtgtgggaggggtttgtgaagtgctgtcaaaggacaaagcctcag
tcatatagtgtgctgctacagctgcctccagcccaactgacaagtgtttttgaacgctgc
ccagaaatgagggagcctctgctacatcatgttcactcgttcacccctcatcagcaagct
cacatacctgcttccatcatggcggtcttggaagtacacaaaaagccagagccaaaacct
gtggagccagtcatggagaaggagattgagcctgttgatactccccctgccttatatctt
aaagaaactcccaccgcagcagtaacagaatcagagacaccagttgagcaggaaccagcg
gtcataaaagatgaagaaccaatggagcaagaggaggcagagccagtcatagaggaggag
agtgctgacactgtttctcagcctgaggtgtcaggaacaagtgatacgccatcacctcag
caggaagcagctgaggaaccaatggagtcatcccagcctgagcctgcagagctggaagag
ctggaaaaagaagctgaagctgacgtcacccccccagaggacggaagcagcagcgaggat
gtcgagtaa
DBGET
integrated database retrieval system
