Betta splendens (Siamese fighting fish): 114847460
Help
Entry
114847460 CDS
T08231
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X3
KO
K06823
collagen type XVIII alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bspl04147
]
114847460 (col18a1a)
00535 Proteoglycans [BR:
bspl00535
]
114847460 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
bspl00536
]
114847460 (col18a1a)
Exosome [BR:
bspl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114847460 (col18a1a)
Proteoglycans [BR:
bspl00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
114847460 (col18a1a)
Glycosaminoglycan binding proteins [BR:
bspl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114847460 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
DAG1
Motif
Other DBs
NCBI-GeneID:
114847460
NCBI-ProteinID:
XP_028993076
UniProt:
A0A6P7LET9
LinkDB
All DBs
Position
21:14992348..15034881
Genome browser
AA seq
1419 aa
AA seq
DB search
MKTQFGVLVFIAQGLLYSEAWFWSWSSTTTAAPAVDHEGSGSFPGSGEQLQEDGAAAEII
NEGHGIQEVAQTTERPPQTTLIPTTQLENDWAPEMSTEEGSSLASTPGNSTASIEEDNGV
SLLQLIGDPPPSEISLVYGPDNSPRYVFGPDANVGQLAQTYLPNPFYRNFALIFNLKPTS
DNGGVVFSLTDEQQQIIYVGVKLSAVQGGHQHVILYYTEPDSQASYEAARFRVPSMRDTW
TRFAVAVRDDKVMLYLNCDIDPQVMRIERSPDEMELDAGAGVFVGQAGGADPDRFLGVIG
ELRVVGDPSAAERHCEEEEDDSDAASGDGSGYAEARPTDPAVKRLTTAPPSSRPIQQPPL
IRRDEVSITRETGPAGPKGVKGDRGEKGDKGDRGPTGPKGETGSGSSLRGGTRGEKGEPG
EKGAKGSAGFGYQGKKGEPGPPGPAGPPGPPGPATELSVGSDGSVVSRVPGPRGPPGPPG
VPGSEGPPGAEGEPGDPGEDGKTGPEGPRGFPGTPGDPGPKGEKGDRGEGQPGPKGPPGP
PGPPGQGLRSTFVDMEGSGFPDLESFRGLPGPPGPPGPPGPAGPSTTGTITSSGAFGPPG
KEGAPGKPGLPGLPGADGSPGAPGPKGEKGDSGELGLPGAVGQKGAQGEAGLPGPTGEPG
LAGLPGPMGPVGSPGPPGPPGPSYRVGFDDMEGSGGGFTNGLPGIRGPQGRQGSPGVPGL
PGQPGQPGTPGPKGSEGPAGGEGQPGLDGFPGAQGPKGDRGDKGERGEPGRDGTGLPGPP
GPPGPPGQIIYHTSGNVDSVIGNAGHQGPVGPKGDRGDPGHPGYGVKGEKGEPGLIIGPD
GNPLHLAGLTGPRGERGLPGPAGPTGPYGPPGLKGEIGMPGRPGRPGVNGYKGEKGESGG
GAAYSYPGVPGPPGPPGPPGPPGPAIPLDRLNRHDETSRSYTAIKGEKGERGLPGFPGTA
SNFDIYAFKSELKGEPGVKGEKGEPGGGYYDPRFGGVQGQPGPPGRPGLPGPKGDSVIGP
AGPQGPAGPPGIGYNGHPGPPGPPGPPGPPASPVPGTYGPNYSVSVPGPPGPPGPPGSPG
LSSGVTVLRSYDTMIGTARRQAEGSLIYIIDKADLYLRVRDGVRQVMLGDYSPFFRDLEN
EVAEVQPPPVILYPQSQDQSQSNGAGHYSQGVPVIQPIGPPPQTPVEPIYPPQYDSRFPN
IKQTGHTDGSLATQQTDGRYSATPPRRPSPPVPQPGVHVDAFRSVLHLVALNAPQTGNMR
GIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRTDRDNVHIVNLKDQVLFSSWE
SLFSAEDTMRDNVPIYSFDGRDILRDSAWPEKMVWHGSSTKGHRQTDHYCETWRASDRAV
TGLAASLQSGHLLQQTSSSCSGSYIVLCIENAITSHSSK
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgaagacccagtttggagttttggtttttatagcccaggggctgctctactccgaggct
tggttctggtcctggtccagtaccacaactgcagccccagcagtggatcatgagggctct
ggcagttttccaggaagtggggagcaactacaagaggatggggctgcagcagagatcatt
aatgaaggacatgggatccaagaggtggctcagaccactgagcgtcctccacagaccact
cttatacctacaacacaactggagaatgactgggcgccagagatgagcacagaggagggt
tcatcactcgcaagtacacctggtaatagcacagcttccatagaagaagacaatggcgtc
tccctgctgcagctcatcggggatcctcctcccagcgagatcagcctcgtctacggcccc
gataacagccccagatacgtctttggtcccgatgccaacgtgggccagctggcacaaacc
tacctgcccaatccgttctaccggaactttgctctcatcttcaacctgaaacccacctcc
gacaatgggggggttgtcttctccctcacagatgaacaacagcagatcatatacgtgggc
gtgaaactgtcggctgtgcaggggggccaccagcacgtgatcctgtactacaccgagccc
gactcacaggcgtcctacgaggctgcccggttccgtgtgccctccatgagggacacctgg
acccgcttcgctgtcgccgtgagagacgataaagtgatgctctacctcaactgtgacata
gacccccaggtgatgcgcattgagaggtccccagatgagatggagctggacgccggcgcc
ggagtgtttgttgggcaggccggaggagccgatccagaccggttcctgggggtgatcggt
gagctgagggtggtgggagaccccagtgctgctgagagacactgtgaagaggaggaggat
gactcggacgcggcatcaggggatggaagtggctacgcggaggccaggcccacagatcca
gctgtgaagagactgacgacagctcctccgtcttctcgacccattcagcagcctccactc
atcaggagagatgaggtgtccatcacacgggagacgggacccgctgggcctaaaggagtg
aagggcgacagaggagagaaaggagataaaggagacaggggtccaactgggccgaaagga
gagacaggcagtggctccagcttacgtggtggaacccgtggggagaagggtgaacctgga
gaaaaaggagccaagggaagcgcaggatttggctaccaaggaaagaagggtgagcctggc
ccccctggaccagctgggccccctggacctccaggccccgcaacagagctttcagttggt
agtgatggctcagttgtttccagggtccctggacccagaggacctcctggacctccaggt
gtcccaggctctgagggaccaccaggagcagagggagagccaggggatccgggtgaggat
ggaaaaactgggccagagggacctcgaggattcccaggaactccaggcgaccctggaccc
aaaggagagaaaggggaccgtggagagggccaacctggccccaaaggccccccgggccca
cctggaccaccaggacaaggattacgatctactttcgtggacatggaaggctcagggttc
cctgacttggaatcttttcggggtttacctgggccaccaggtcctcctggtccaccaggt
cctgctggtccttctacaactggcacaataacaagttctggggcttttggcccaccagga
aaggagggggcacctggtaaacctggcctgcctggattacccggggctgatggcagccca
ggtgctcctggacccaagggagaaaagggtgattctggcgagctgggtcttccaggagca
gttggacaaaagggagctcaaggagaggctggcttaccgggacctactggagagcccgga
ctggctggtcttcctggacccatggggccagttgggtcacctggacctcccggacctcca
ggaccaagctatcgcgttggatttgatgacatggaggggtctggtggaggttttaccaat
ggacttcctggtatcagaggaccacaaggaagacaaggctctcctggtgtacccggactc
ccaggccaacctggacaacctggaacaccaggtccaaagggcagcgaaggtcctgcaggc
ggggaaggacagccaggcctggatggcttcccgggggctcagggaccaaagggtgacagg
ggcgacaaaggagagaggggcgaacccggtcgagatggaaccggactcccaggtccacct
ggcccacctggaccaccaggtcaaatcatctaccacacatctggcaatgttgacagtgtt
attggcaatgctggacatcagggtcctgttggacctaagggagatagaggagaccctggt
catccaggctatggggtaaagggggaaaaaggtgagccaggattgatcataggccctgat
gggaatcctttgcatctggcaggattaacaggtcccaggggagagagggggttacctgga
cctgctggacccactggcccctatggacctcctggattaaagggtgaaattggaatgcct
ggaagacctggtcggcctggcgttaatggatacaagggtgagaaaggagagtccggagga
ggagctgcctatagctacccgggagtccctggcccaccaggaccacctggaccacctgga
ccccctggccctgccattcctttagaccgcttaaatcgtcatgatgaaacttcgaggagt
tacacagcaattaaaggagaaaaaggagagcgaggactcccaggattcccaggaacagcc
tctaattttgacatttacgcattcaagagtgaactaaaaggagagcctggtgtgaaggga
gaaaagggagagccaggtggtggctattatgacccacgttttggaggagtgcaaggccaa
ccagggcctccagggagaccaggactaccaggtccaaaaggagactcagtaattggccct
gctggaccccaaggaccagcagggcctccaggcattggttacaatgggcacccaggtcct
cctggaccgcctggaccaccaggacctccagcatccccagtacctggaacttacgggccc
aattactctgtcagtgtccctggacccccaggccctcctggtcccccaggtagccccggc
ctctcttctggtgtcacagtgctgaggtcatatgacacaatgattggtacagccagacgc
caggcggaggggagccttatctacatcatcgacaaagcagatctgtatttaagagtacgt
gatggagtacgccaagtcatgcttggagactacagtcccttcttcagagatttggagaac
gaagtagcagaagtccagcctcctcccgtgatcctgtacccccagtcccaggaccagtcc
cagagtaatggagctggtcattattcccagggggttcccgtcatccaacccattggtccc
ccaccacagacacctgtagaacccatatatcccccacagtatgattccaggttcccaaac
ataaaacaaacaggtcatacagatggaagcctagccacccaacagactgatggcaggtac
tcggcgactccaccgagacgaccaagtccacctgtcccacagcccggtgtccacgtagac
gcattccgttcagtacttcatcttgtggccttgaacgcccctcaaactggaaacatgcga
ggaatccgtggcgcagacttcctgtgctttcagcaggctcgagctgtgggtctgaagggc
accttcagagcattcctgtcctccaagctccaagacctctacaccatcgtacgcaggacg
gaccgggacaacgtccacattgtcaaccttaaggaccaagtcttgttcagtagctgggag
tcactcttcagtgctgaggacacaatgagggacaatgtgcccatctactcttttgatggt
agagatatcctcagggacagtgcatggccagagaaaatggtctggcatggatcgagcacc
aaaggccaccgacagacggaccactactgtgaaacatggcgggccagtgaccgtgctgta
actggtctggcagcttcgctacagagtggacaccttctgcagcaaacctccagtagctgc
tccggctcctacatagtcctctgcattgagaatgccattacatcccattcctcaaagtaa
DBGET
integrated database retrieval system
