Betta splendens (Siamese fighting fish): 114848178
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Entry
114848178 CDS
T08231
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03015
mRNA surveillance pathway
bspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114848178 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
114848178 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114848178 (pabpc4)
03041 Spliceosome [BR:
bspl03041
]
114848178 (pabpc4)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114848178 (pabpc4)
mRNA cycle factors
Stress granule specific factors
114848178 (pabpc4)
Spliceosome [BR:
bspl03041
]
Complex C
Other components
Complex C specific factors
114848178 (pabpc4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_MUD2_C
RRM_5
RRM_7
RRM_occluded
RRM_ACIN1
RRM_10
RBD_RDR6
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
114848178
NCBI-ProteinID:
XP_028994305
UniProt:
A0A6P7LIX0
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All DBs
Position
22:complement(11166709..11173025)
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AA seq
627 aa
AA seq
DB search
MNAATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDDRLKEIFDKYGKTLSVKVMTDPTGKSRGFGFVSYEK
HEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQMRPNPRWQQQGGRGQGGFQGIPGSLRQPGPRANLRHMSPSSSSQGPRASGQ
SMAPRPSMGVPGPRAMPPYKYATNVRNPNPPVVQPIALQQAQPAVHVQGQEPLTASMLAA
APPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKVGSMAPTATAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcagcgacggggagttatccgatggcttctctctacgttggcgacctgcacccc
gacatcacggaggcgatgctctacgagaaattcagcccggccggaccggtcctctccatt
cgggtctgccgggacatgatcacccggcgctccctgggctacgcgtacgtcaacttctcc
cagcccgcggacgccgaaagagccctggacaccatgaactttgacgtggtgaaagggaag
ccgatcagaatcatgtggtcccagagagacccgtccctcaggaagtccggcgtgggcaac
gtgttcatcaagaacctggacaagtccatcgacaacaaggcgctgtacgacaccttctct
gcgttcggcaacatcctctcctgcaaggtggtttgcgacgaaaacggctccaagggctac
gcgttcgtccatttcgagacccaggacgccgccgaccgcgccatcgagaagatgaacggc
atgctgctgaatgaccgcaaggtgttcgtgggtcgtttcaagtctcgcaaggagcgtgag
gctgagctgggagcgaaggccaaagagttcaccaacgtctacatcaagaacttcggggac
gatatggacgatgatcgactgaaggagatttttgacaaatacgggaaaacactcagcgtg
aaagtgatgaccgaccccaccggcaaatccagaggcttcggatttgttagttatgagaag
catgaggacgctaacaaggccgtagaagacatgaacggcaccgaactcaacggcaagact
gtgttcgtgggccgagctcagaagaagatggagcggcaggcggagctgaagaggaagttt
gagctcctgaagcaagaaaggatcagtcgttatcagggtgttaatctttacattaaaaac
ctggatgacacaatcgacgacgagaaactgcgcaaggaattctccccgttcggatccatt
acaagtgccaaggtgatgctggaggagggccgctccaaaggcttcggcttcgtgtgcttc
tcgtcccccgaggaggccaccaaggccgtgaccgagatgaacggccgcatcgtgggctcc
aagcccctctacgtggccctcgctcagcgcaaagaggagcgcaaggctcacctcaccaac
cagtacatgcagcgcatcgccggcatgagggccatgcccgccaacgccatcattaaccag
ttccagcccaccagcggctacttcatgccagcagtgccacaggcccagaacaggaccacg
tattatgcacccaatcagctggcccaaatgcgtcccaaccctcgatggcaacaacaagga
ggaagaggtcaaggtggattccagggaatccccggctccctgcgtcagcctggaccacgt
gccaacctgagacacatgtctcccagtagcagctcccaaggcccacgagcttctggacag
tccatggctcctcgtccctccatgggagtccccggccctcgggccatgcctccttacaaa
tatgccactaatgtccgtaaccccaacccccccgtggtgcagcctattgccttgcaacag
gctcagccagccgttcatgttcaggggcaggagcctctcacagcctcgatgctagctgct
gcgccccctcaggagcagaagcagatgctgggggagcgcctgttcccactgattcaggcc
atgcatgccaacctggcagggaagatcaccggcatgttgctggagatcgacaactctgaa
ctgcttcacatgctggagtctcacgaatctctgcgttcaaaggttgaagaagctgtcgcc
gtcttacaggcccatcaggccaagaaagacgccacccagaaggtgggaagcatggcacct
actgctactgctgccacatcctga
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