Betta splendens (Siamese fighting fish): 114849046
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Entry
114849046 CDS
T08231
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
114849046 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bspl04131
]
114849046 (si:ch211-266g18.9)
Membrane trafficking [BR:
bspl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
114849046 (si:ch211-266g18.9)
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
Clathrin
zf-Vps39_C
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
114849046
NCBI-ProteinID:
XP_028995895
UniProt:
A0A6P7LNP3
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Position
22:6001156..6005508
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AA seq
830 aa
AA seq
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MAFKAFTQTRVFVKRAAPKEKDKSCIQCLECHGPNVYLGTKDATVQHLILPSAHGELGPV
QSPAREGRMRKLGSSGPVVHLRTVPLFNHLLVLWDRGVSALNMFSLEPVPALPRIQHVSL
FEVRDTPLAVQMLTASSRRKAIWLHVVGVDKWEAVKEIPLPQDPVAFALDGASLCVGTCN
RYLLCDIQSGCTGELFPHSHSRERVFVASVGRGEFLLNGPESLGVFVMETGICQRPPLQW
PQEVLAAGVCFPYIVALQPQALCVYSLLDQQHKLTLGLSGARGLLPVPDGVLVFTDRDIS
SLRLVPLEEQIQALVELESFEEALLLLDGVHSRRPIDSYKERQKAITCLAGFAHFYQEGF
SEARDLFIKGELDPREIIHLFPGMRSLLCGDFQPQYDGVNKGRALQVLWQDDSSALHRYL
AFLGEFLRAVSSTERGLRCGKEVDSALLRLYTELGDAENLQQLAEMPNKCLLDHCVPVLE
QHNRYFALGSLYQSHGKHTNAIETWVKIADGFYKDPSCSDVYGHIVWTLSRLQDREAVWE
FAEWTVRRNQEMGVRIFTLRPLDAQLEVLDVLALLEKYPRALILYLEFLIHDLNNEEERH
HSRLALAYVSQALHEEADLRATRGKLQQLLWESRFYDVSAVHERVKSTALHVEEAIVLSR
AGDHARALQVLVHQERDVRAAEAFCSRAARGRGSQRRRALLLSLLQIYLGSEQLAGAAAD
LLNRNPRVFRAETAVQLLPEAWSVQLVSRFLVGSLRESLHQRRTAKLRAALCRAELLRHK
VIRMQASRTKLALDAEQKCSVCQGCFAEPQFARNPRGELMHTGCAGFLAP
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaaagctttcacgcagacgcgcgtctttgtaaagcgagcggccccaaaggaa
aaggacaaatcctgcatccagtgccttgagtgccacggcccaaatgtctacctggggact
aaagacgcgacagtccagcacctgatcctgcccagcgcacatggagagctgggtcctgtc
cagagcccagccagagaaggtagaatgagaaaactaggctcgagcggcccagtggtccac
ctgaggacagtaccgcttttcaaccacctgctggtcctgtgggatcgaggcgtctccgcc
ctcaacatgttttccttagagccggttcccgctctgccgaggatccagcacgtgtctttg
ttcgaggtgcgcgacacgccgctcgcggtacagatgctgaccgcgtccagccgcaggaag
gccatctggctccacgtggtgggagtggacaagtgggaggccgtgaaggaaatcccgctg
cctcaggacccggtggccttcgctttggacggcgccagtctgtgtgtgggcacctgcaac
aggtatctgctgtgtgacattcagagcggctgcacgggggagctctttcctcacagtcac
agcagagagcgtgtcttcgttgcgtcagtgggacgaggggagtttctcctaaacgggcct
gaatccttgggcgtttttgtgatggagacaggaatatgccagcgcccccccctgcagtgg
ccgcaggaggtgctggcagccggagtgtgtttcccttacatcgtagccctgcagccccaa
gcgctgtgtgtctacagcctgttagatcagcagcacaaactgaccctgggcctcagtgga
gccagaggtctgctgcccgttccagatggtgttttagtgttcacggacagagacatttcc
agcctgcgcctggtgccactcgaggagcagatccaggctctcgtggagctcgagagcttt
gaagaggccttattgttgctggacggagttcacagccgccgtcccattgactcgtacaag
gagcggcagaaggccatcacttgcctggctgggttcgctcatttttaccaggagggcttt
tccgaggccagggatctattcatcaaaggcgaactggaccccagagaaatcatccacctg
ttccccggcatgcggtcgctcctctgcggtgacttccagccccagtatgatggagtaaac
aagggcagggccctccaggtgctctggcaggacgacagcagcgcgcttcatcgttacctc
gccttcctgggggagtttctcagagcagtcagcagcaccgagcgaggcttgcggtgcgga
aaggaggtggactctgccctcttgaggctgtacacagaactgggggacgcggaaaatctg
cagcagctcgcggaaatgccaaacaaatgcttgctggaccactgcgttccggttctggag
caacacaacagatattttgcattgggctccctctatcaaagccatgggaagcacactaat
gcgatagagacttgggtaaaaatagcagacggcttctacaaagacccgtcttgctcggac
gtgtatggccacatagtgtggacgctcagtcggctacaagacagagaagctgtgtgggaa
tttgcagagtggactgtgcgaagaaaccaggagatgggtgtgcggattttcaccctgcgt
ccactagatgctcagctggaggtgctggacgtcctggctctcttagagaagtacccacgg
gcgctgatactctaccttgaattcttaatccatgatttaaacaacgaggaggaaaggcat
cacagtcgtctggctctggcatatgtgagccaggctctgcatgaggaggcagatttgagg
gcgaccagagggaagctgcagcagctgctctgggagtccagattctatgacgtctccgca
gtacacgagagggtcaagtcgaccgccctccacgtggaggaggccatcgtcctcagcaga
gccggggaccacgcgcgggcgttgcaggtgctggttcaccaggagagggacgtccgggcg
gccgaggccttctgcagcagggcggcgcgcggccggggctcccagcgcaggcgagcgctg
ctgctcagcctgcttcaaatctacctggggtccgagcagctcgccggcgccgccgcggac
ctgctcaaccgcaacccccgcgtcttccgggccgagacggccgtccagctcctgcccgag
gcctggtccgttcagctggtgtcccgcttcctggtcggatccctcagggaaagcttacac
cagaggcggacggcgaagctgcgagcggccctgtgtcgagcggagctcctgcggcacaag
gtcattcggatgcaggcgtcgaggacaaagctcgcgctggatgcggagcagaagtgctcg
gtttgccagggatgctttgctgagccacagtttgctcgtaacccccgcggtgaactgatg
cacactggctgcgctggctttttggcaccataa
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