Betta splendens (Siamese fighting fish): 114849975
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Entry
114849975 CDS
T08231
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03008
Ribosome biogenesis in eukaryotes
bspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
114849975 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
114849975 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bspl03021
]
114849975 (xrn2)
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114849975 (xrn2)
03009 Ribosome biogenesis [BR:
bspl03009
]
114849975 (xrn2)
03016 Transfer RNA biogenesis [BR:
bspl03016
]
114849975 (xrn2)
Transcription machinery [BR:
bspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114849975 (xrn2)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
114849975 (xrn2)
Ribosome biogenesis [BR:
bspl03009
]
Eukaryotic type
Pre-60S particles
RNases
114849975 (xrn2)
Transfer RNA biogenesis [BR:
bspl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
114849975 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
114849975
NCBI-ProteinID:
XP_028997687
UniProt:
A0A6P7LUQ3
LinkDB
All DBs
Position
24:13872784..13892249
Genome browser
AA seq
979 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCVEEKGKQCNGVRIPVDTTRPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELAEEKGRIREEIIQRGGYLPPEQIKERFDSNCITPGTEFMDNLAQCLRYYIAD
RISNDPGWKNITVILSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQMGHEIKDCEGTAREKQGEHDEFAGSMPVSEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVSIYKDVVHKTGGYLTQNGYVNLERVELIMQAVGVAEDNIFKKRKEDDESFKRRMKE
KRKRMKAEQQGPAFLTTGQFAPQALGRRDRPEPVQNARHQAYGMRMQAREQNNKDAAQSL
KAMMRNGGNSSAEPSGGANSRGLKRKAEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDV
TDDDFRQKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKEMFKDFEKGT
KPFKPLEQLMGVFPAASGNFLPSTWRNLMSSSDSSIIDFYPDDFAIDLNGKKYAWQGVAL
LPFVDERRLRAALTDVYPDLSPEEVKRNSLGSDVLFLGSSHPLFDFIQELYRTESNEGTE
IPAELCHGIQGMLNLDNNPILPNETVVSPIPTLRDISHNGSIGVKFKDPQYADDFVFKAV
LLPGAKIPTKVLKPGDWERGNREPWRPQLGFNPNRQQAHLDQSGFRALSHSVNRNQHSGQ
YSNTPPPNSYQRGHHRPSHGGGHQPFPHSRQSLLGAPPSYQQPQYPRQQQQQQQHYGGGG
GGQGHGWDRAMQAQRSSYQQNMARGPGGGGAGGYQQRYEQRRDDWPERRDNWSQQHQGYS
SGRGYPAPPPSKRYTWNNN
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcatttttccgttggctcagccgaaaatatccgtcaatcatcgtgcac
tgtgtggaggagaaggggaaacaatgcaatggagttcgcatccctgttgatacgacgaga
ccaaacccaaacgatgtggagtttgacaacttgtacctggacatgaatggaatcattcac
ccgtgtacacatccagaggacaagcctgctcctaaaaatgaagatgagatgatggtcgcc
atatttgagtacattgaccgactgtttaacattgtgcggcctagaagagttctctacatg
gccatcgatggggtggctccgcgggctaaaatgaaccagcagcgctctcggcgttttcgt
gcctcaaaagaaggagtggagctggcggaagagaaaggtcgaatcagggaggagatcatc
cagagaggaggttacctcccacctgagcagattaaggagaggtttgacagcaactgtatc
actccaggaactgagtttatggacaacctggcacaatgtcttcgatattacattgcagac
agaatcagcaatgatccaggatggaagaatatcactgttatcctttctgacgccagtgtt
cctggtgaaggtgaacacaagattatggacttcatcaggagacagagagctcaacccaac
cacgaccccaacacccatcactgcctgtgtggagctgatgctgatttgatcatgctgggt
ctggccacccatgaaccaaacttcacaatcatcagggaggagttcaaacccaataaaccc
cgtccctgcgccctctgtggacagatgggccatgaaatcaaagactgtgagggcacagcc
agagagaagcagggagagcatgacgaatttgcaggctcaatgccggtgtctgagcaggag
ttcatatttatcaggctgtgtgtgctacgagagtaccttgccagagagctgaccatggcc
agtctgccgtttccctttgacttcgagaggagcattgatgactgggtcttcatgtgtttc
tttgttggaaatgactttcttccacacctgccgtccttagaaatcagagagggggcaata
gatcgactggtcagcatctacaaagacgtagtgcacaaaacaggaggctacctgacacaa
aatggttacgtcaacctggagcgtgttgagctcatcatgcaggcggtgggtgtggctgag
gacaacatcttcaaaaaacgcaaggaagacgacgaaagcttcaagagacggatgaaagag
aaacgaaagaggatgaaagcagagcagcaaggtcccgccttcttgaccacaggccagttt
gctcctcaggcgctggggagacgggaccgaccagagccggtccagaacgcacggcaccag
gcctacggcatgaggatgcaggcccgggagcaaaacaacaaggacgcagctcagtctctg
aaggccatgatgaggaacggaggcaattcgtctgccgagcccagcggcggtgccaacagc
agggggctgaagaggaaagctgaggacagcgacagcgagccagagcctgaagacaacgtc
aggttgtgggaggacggctggaagcagagatactacaagaccaagtttgacgtggacgtg
acggacgacgatttcaggcagaaagtggttcagtcgtacgtggagggtctgtgctgggtg
cttcgctattattaccagggctgtgcctcctggaagtggtacttcccctttcactacgcc
ccattcgcctccgacttcaaagacatcaaggagatgttcaaagactttgagaaagggacc
aaaccgttcaagcccctggagcagctgatgggagtgtttcctgccgccagcggcaacttt
ctgccctcaacgtggagaaacctgatgagcagctcggattcctccatcattgacttctac
cctgacgactttgctattgaccttaacgggaagaaatacgcctggcaaggtgtggccttg
ttgccttttgtggatgagcgacggctgagagcagctctgaccgacgtctaccctgacctc
tcacctgaggaagtcaaaagaaacagtctgggaagtgacgtgttgtttctcgggtcatct
catccgctctttgacttcatccaagaactatatcgcacagaatccaatgagggcactgag
atccctgcagagctgtgccacggaatccagggcatgttaaatcttgacaacaaccctatt
ctacccaacgagacagtggtgtcgcccatccccacgctgcgcgacatttcacacaacgga
tctattggagtgaagtttaaggatccacagtacgcggacgactttgtgttcaaggcagtt
cttctgcctggagccaagattcccaccaaagttctgaagccaggtgactgggagaggggc
aacagggagccgtggagaccccagctgggcttcaacccaaaccggcagcaggcacatctg
gaccagtccggcttcagggctttgagtcacagtgtgaacagaaaccagcacagtggacag
tacagcaacactccacctcccaacagctaccagcgaggacaccaccgcccttcacacggc
ggcggccaccagcctttcccacattccaggcagagtttgctgggagcgccgccctcctac
cagcagccccagtatcccaggcagcagcagcagcagcagcagcactacggaggcggaggc
ggaggccagggtcacggctgggaccgggccatgcaggcgcagcgctcgtcctatcagcag
aacatggcccgcgggccgggaggcggcggcgccggaggttaccagcagcgctacgagcag
cgcagagacgactggccggagcgcagggacaactggagccagcagcaccagggctacagc
tccggcagaggttaccccgctcctcctccgtccaagagatacacctggaataataattaa
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