Betta splendens (Siamese fighting fish): 114849979
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Entry
114849979 CDS
T08231
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114849979 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bspl03021
]
114849979 (cpsf3)
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114849979 (cpsf3)
Transcription machinery [BR:
bspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114849979 (cpsf3)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114849979 (cpsf3)
U7-dependent histone pre-mRNA processing factors
114849979 (cpsf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
LPD7
Motif
Other DBs
NCBI-GeneID:
114849979
NCBI-ProteinID:
XP_028997696
UniProt:
A0A6P7LS85
LinkDB
All DBs
Position
24:complement(14336305..14340692)
Genome browser
AA seq
686 aa
AA seq
DB search
MAAKRKSDVNVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMTEPDEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDDVHIEVHNPRNTEAVTLNFRGEKLAKVMGLLADR
KCAQGQRVSGILVKRNFNYHILTPSDLSNYTDLSMSTVTQTQAVPFTGPISLLVSQLRNL
AGDVEQVDGAEKITIKVFKNITVVHEAGMVLLEWIANPLNDMYADAITTVVLEVQSNPNA
QKFLEGKRETFDEDMFVERLALMLHDMFGDDCVNYKDNKNLSVTVDGVTAFINPGARSVT
CTEDESLRDMVEVAIHRLYDTLSPIF
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaacgtaaaagtgacgtgaacgtccctgcggaggaaagcgaccagctgctc
atccgtccgctaggagcaggtcaggaagtgggccggtcctgcatcattctggagttcaag
ggcagaaaaatcatgctggactgtgggatccaccctggtctggagggcatggacgccctg
ccttacatcgacctgattgatccagcggagatcgacctactgctcatcagccacttccac
ctggatcactgtggtgctcttccctggttcctgcagaagaccagtttcaaaggacgtaca
ttcatgactcacgccaccaaggccatctaccgctggctgctgtcggactatgtcaaagtc
agcaacatttctgcagacgacatgttgtacactgagacagacttggaagagagcatggaa
aaaatcgaaactatcaactttcatgaggtaaaggaagtggccggcatcaagttctggtgt
taccacgctggacatgtgctcggagccgccatgttcatgatcgagatagctggcgtcaag
ctgctgtacacgggggatttctcccgacaggaggacagacatctgatggcagcagagatt
cccagtgtcaaaccagacatcctcatcaccgagtccacatacgggactcacatccacgag
aagagggaggagcgcgaggctcggttctgtaacaccgtccacgacatcgtgaaccgggag
ggacgctgtctgatccccgtctttgctctgggacgagcccaggagctgctgctcatcctc
gatgagtactggcaaaaccacccagagctccatgacattcccatctactacgcctcatca
ctggccaggaagtgcatggccgtctaccaaacctacatcaacgccatgaacgacaaaatc
cgaaaagccataaacatcaacaacccctttgtcttcaagcacatcagcaacctgaagagc
atggatcactttgacgacatcggccctagcgtggtgatggcgtctcctggtatgatgcag
agcggcttgtccagagaactgtttgagagctggtgcaccgacaagagaaatggcgtcatc
atcgctggatactgtgtggagggaacgctggccaagcacatcatgacggagcccgatgag
atcaccaccatgtcgggtcagaagcttcctctgaagatgtcagtggactacatctcattt
tctgctcacacagactatcagcagaccagcgagttcatccgagccctcaaacctccacac
gtgatcctggtccacggggagcagaatgagatggcccgtctgaaggcagctctgatccga
gagtacgaagataacgatgatgttcacattgaggtccacaaccctcgaaacacagaggcc
gtcacgctcaacttcagaggagagaaactggcaaaggtcatgggcttgctggctgacagg
aaatgtgcccagggtcaaagggtctctgggatcctggtcaaacgaaacttcaactaccac
atcctgactccctccgacctctccaactacacggatctgtccatgagcacagtgacgcag
actcaggccgtcccgttcaccgggcccatctccctgctggttagccagctgcggaacctc
gctggagatgtggagcaggtggatggagcagagaaaatcaccatcaaggtctttaagaac
atcactgtggtgcacgaagccgggatggttctgctggagtggatcgccaaccctctcaat
gacatgtatgctgatgccatcaccacggtggttctggaggtccagtccaaccctaacgcc
caaaagtttctggaaggcaagagggaaacctttgacgaggacatgttcgtggagaggctg
gcgctcatgctgcacgacatgttcggggacgactgtgtgaactacaaagacaataaaaac
ctaagtgtgacggtggacggagtcacggcgttcatcaacccaggagccagatccgtcacc
tgtacagaggacgagtccctgagggatatggtggaagtcgccatccatcggctgtacgac
accctcagccccatcttctga
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integrated database retrieval system
