Betta splendens (Siamese fighting fish): 114850043
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Entry
114850043 CDS
T08231
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bspl03041
]
114850043 (ddx1)
03016 Transfer RNA biogenesis [BR:
bspl03016
]
114850043 (ddx1)
Enzymes [BR:
bspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114850043 (ddx1)
Spliceosome [BR:
bspl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114850043 (ddx1)
Transfer RNA biogenesis [BR:
bspl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114850043 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
SNF2-rel_dom
DUF1667
Motif
Other DBs
NCBI-GeneID:
114850043
NCBI-ProteinID:
XP_028997812
UniProt:
A0A6P7LV25
LinkDB
All DBs
Position
24:7813358..7818744
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRASIKTGGAIFNNWQMNPYDRSNAFAIGPGGLCCQSREFKEWH
GCRSTKGVTKGKYYYEMTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSTNKQFD
SYGEEFTMHDTIGCYLDLEKGQISFSKNGNDLGLAFEIPQNLRNQAFFASCVLKNAELKF
NFGGEEFKNPPKTGFVALDQAPESHTVKSSQTGSAKVSQVKTSSNAPKALIIEPSKELAE
QTLNNVKQFKKYVDNPKLRELLVIGGVAAKEQLAALEQGVDIVVGTPGRLDDLISTGKLS
LAQVRFLVLDECDGLLTAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDHLWERLGKNHIQTDEVHAKDNTRPGVN
SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKNHQF
SCVCLHGDRKPNERKNNLDRFKKKEVRLLICTDVAARGIDIHGVPFVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKIPVDEFDGKVTYGQRRALGGGNYKGHVDVLAPTVQELANLER
EAQTSFLHLGYMSNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggagttatgcctgaaatcgcgcaggcggtggaagagatg
gactggctgctacctactgacatccaggctgagtccatccccctgattcttggtggagga
gatgtactcatggcagcagaaactggtagtggtaaaacaggagccttcagtatcccggtg
attcagattgtgtatgaaaccttgaaggatcagcaggagggcaagaagggaagggcctct
atcaagactgggggagccattttcaataactggcagatgaatccttatgatcgcagtaat
gcttttgcaattggtccaggtgggctgtgctgccagagcagggagtttaaagagtggcac
ggctgtcgctctacaaaaggtgtcaccaaagggaaatactattatgagatgacttgccat
gatcagggtctgtgccgggtcggttggtcgaccagtcaggctgcactggatttaggaact
gacaagtacggctttggttttggagggactggaaagaaatctaccaacaagcagtttgac
agctatggggaggagtttaccatgcatgacactattggatgttacctggatctagaaaag
ggccagatttccttctccaaaaatggtaatgatttgggtttggcttttgagatcccccaa
aatctgagaaatcaggctttcttcgcctcctgtgttctcaagaatgcagagctcaagttc
aactttggaggggaagaatttaaaaatccaccaaagactggattcgttgccttggatcaa
gcaccagagagtcacacagtgaaatcttctcagacaggcagtgctaaagtcagccaggtg
aaaacatcatccaacgcacctaaagctttaatcatcgagccatctaaggaactggctgag
caaactctgaacaacgtcaagcagttcaagaaatatgtggataaccctaaactaagggag
ctactagtgattggtggtgtggccgccaaggagcagctagcagccctagaacagggggtt
gacattgtggtgggaacccctggaagactggatgaccttatatccaccggaaaactcagt
ctggcccaagtccgcttcctagtcctggatgagtgtgatggtctcttgacagctggctat
accgacttcatcaacagaattcataatcaaattccacaggttacatctgatggcaagaga
ctccaggtgattgtgtgttcagctactttgcattcatttgacgtaaagaagttgtctgag
cgcatcatgcactttcccacctgggtggacttaaagggggaggactccgtcccagagacg
gtccatcacgtggttgttcctgttaatcctaaaaccgaccacctctgggagcgtctggga
aagaatcacatccagactgatgaagtacacgccaaagacaacaccagaccaggagtcaat
tctgctgaaatgtggtcagaagccatcaaagtgctgaagggcgagtacacggtgagagcc
atcaaagagcacaagatggaccaggccataatattctgtcgcaccaagatcgattgtgac
aacatggaacagtacttcatccagcaaggaggaggtccagacagtaaaaaccaccagttc
tcttgtgtttgtctccatggcgatcgcaagcccaatgagcgaaaaaataacttggatcgt
ttcaagaaaaaagaagtgaggctcctgatctgcacggacgttgctgccagaggaattgat
attcacggagttccttttgtaattaatgtgacattgccagatgagaagcagaactatgtc
catcgcattggcagagtaggaagagctgaaagaatgggtttggccatctctttggttgct
atggagaaggagaaggtttggtatcatgtttgcccaaaccgaggcagaggttgctacaac
acccgactgaaggaggatggtggttgcaccatctggtacaatgagaaggagctcctgtca
gaaattgaggagcacctgaagtgcaccatcacacagtgtgagccagacataaaaatacct
gtggatgagtttgatggaaaggttacctacggtcagcgcagggcactgggaggtggtaac
tacaaaggtcacgtggatgttctggccccaacggtccaagagctggctaacctggagaga
gaagcccaaacctccttcctccacctgggatacatgtcaaaccagcttttcagggctttc
taa
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