Betta splendens (Siamese fighting fish): 114851381
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Entry
114851381 CDS
T08231
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04510
Focal adhesion
bspl04512
ECM-receptor interaction
bspl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114851381 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114851381 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114851381 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bspl04147
]
114851381 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
bspl00536
]
114851381 (col4a6)
Exosome [BR:
bspl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114851381 (col4a6)
Glycosaminoglycan binding proteins [BR:
bspl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114851381 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114851381
NCBI-ProteinID:
XP_028999004
UniProt:
A0A6P7LYG0
LinkDB
All DBs
Position
2:complement(18901844..18971870)
Genome browser
AA seq
1704 aa
AA seq
DB search
MKFLVCLAAVALALRSTHAGAKFDEPCAGLDCSEGCRCNPEKGSRGHPGVLGEVGPSGAE
GSPGRPGPQGPKGEKGHIGLKGPSGLKGDKGPMGVPGFPAIDGVPGHPGLDGGRGLPGLD
GCKGTSGDPGSPGFGTGSPGFPGIAGPTGPKGQKGEPQYIPENGQRGPQGIPGPPGQNGI
EGPGGSLGFPGPRGPDGYPGPPGPPGPPGPMGTRGDGYRGERGDKGDVGLPGPSGTPGDG
SLISEQTLIIYKGDKGEPGPKGGRGFPGNPGLPGPFGYQGETGEKGIPGYPGGRGSPGFN
GPPGSPGEQGFRGSPGFPGQPGYIGRKGDQGDPGPPGPTTFSNEIGTSLQGQPGDGGLNG
LPGIPGAQGAPGFPGQPGLPGTLTNGFPGRQGYPGPPGSKGDAGNPGQPSYGIEGVQGPP
GFPGPAGPAGPPGPRAQSGSTDPCVIYPGPEFQGVSYPGPDGLPGSRGLPGDRGYKGFRG
DPGDCNCLGGEFKGQPGLPGPAGPVGRDGFNGPKGGAGDRGTPGFNGIPGPTGLPGVAGV
FGRKGQKGEPYYPPLAAKGERGAPGLMGPTGETGKPGRDGFPGSPGAPGLPGDAGVGTGG
EKGFPGFSGPKGRQGSPGEPGVGYVGTPGFAGEPGDPGIPGFPGPPGLPGMKGENICGGV
YDVREGTGQLLPCIIPGEEGNPGPSGLPGQPGPKGRSGFPGEPGRPGFDGAKGERGEPGF
GGLPGPQGFTGPRGDPGLPGIPGQSFDGPRGKDGVPGFPGVKGQPGEVLGATPGLPGSAG
LPGVFGDKGQSGTPGTPGIPGADGRSGVPGLKGERGVNGLPGFPGPPGFSGSPTDAVPGK
RGVSGESGRRGPPGFPGRKGDRGDPGFPGPAGMKGTPGLPGFPGLPGPSGPPGPPGLGNR
EGFPGSQGRKGERGYPGLVGFTGPPGPTGAPGFPGDKGKPGAFGRDGRPGAPGPSGMKGE
RGPFGPPGLPTSYTPPGLLHKGEPGFPGGTGLSGFTGPRGDKGLSGVPGSPGLSGLSGLP
GQIKGQKGEPGFPGQRGGPGYPGPKGEDGIMGFPGMPGPRGDEGAPGFPGTPGESGRPGF
KGQPGESYGIIGGPGSKGLPGDPGFSGGRGFDGAPGDNGFPGSPGFPGSKGAHGETGRPG
FMGSPGFPGAKGQPGFPGIRGLDGPLGLPGGLGGPGAKGLPGSPGLDGLNGLAGQKGSPG
TPGVATNSRPGLPGVPGVKGERGLSFPGPPGFSGQKGTRGEQGFPGLPGIPGLPGLPGES
GRSNIPGPMGDPGFVGQDGDYGLPGLPGPRGPPGPGTVQGDRGDSGLPGFPGNPGSKGEP
GLPAGPGLPGSYGVKGVRGDAGFSGEPGFKGYPGDSGAYGYKGAKGAQGSPGPKGPPGTF
ISIPGSPQLLIEGEPGIPGESGLFGGPGQPGQPGLPGRQGPKGRSGSVGKLGRSGAPGFP
GPVGDPGPTGLPGSTGEQGRPGGVGRPGPPGSVGRSSSIGYTLVKHSQSSQVPMCPQGMA
KLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRNDKSYWLST
TAPIPMMPVAREQIRPYISRCSVCEAPSQAVAVHSQDTSIPTCPPGWRSLWIGYSFLMHT
AAGAEGGGQSLVSPGSCLEDFRATPFIECNGGKGTCHYFANKYSFWLTTVDPRQEFVGSP
AQETLKGGQQFSKVSRCQVCSKLL
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttctggtttgtctcgcagcggtcgccttggcgctgagatccacgcacgcagga
gcgaagtttgatgaaccatgtgcgggcttggactgcagcgagggatgcaggtgcaacccg
gagaaaggcagcagggggcatccaggggttctgggcgaagttggcccaagtggagcagaa
gggtcccctgggaggcctggacctcaagggcctaagggagagaagggccacattggactg
aaaggaccatctggccttaagggggacaaagggccgatgggggtgccagggttcccagca
atcgatggagtgcccggtcaccctggtctggatggtggcagggggttaccaggactggac
ggttgtaaaggaacctcaggggatcctggaagccctggctttgggacaggatcacctgga
ttcccaggaattgctgggcctactgggccaaaaggtcagaagggagaacctcaatacatc
ccagagaatggacaaaggggtccacaaggtattccaggaccacctggtcaaaatggtatt
gaaggtcctggtggttcacttggtttccctggtccaagaggtcctgatggataccccggc
ccacctggtcctcctggtccccctggaccaatggggacccgtggtgacggatatcgagga
gagcgaggagacaagggcgacgtgggtctgccaggacccagtggtactccgggcgacggg
tcgctaatcagcgaacaaactctcattatctacaaaggagataagggtgaacctggacca
aagggaggcagaggattccctggcaatcctggcctacctgggccttttggctatcagggt
gaaaccggagagaagggcattcctggatatcctggtggaagaggttctcctggttttaac
ggaccccccggcagcccaggagaacagggattcagaggatcgccaggtttcccagggcaa
ccgggatacataggacgcaagggagaccagggagaccccggacccccaggacctactacg
tttagtaatgagattggaacgtccctgcaaggacaaccaggggacggaggtctcaatggc
ctgcctggcatcccaggtgcccagggagctccaggcttcccaggacaaccaggcctgccg
ggaacactaactaatggatttccaggtcgtcaaggttatcctgggcccccggggtcaaag
ggcgacgctggcaacccgggccaaccaagctatggcattgaaggagtccaaggacctcct
ggcttccctggacctgctggacccgctggtcctccaggacctcgagcccagagtgggtcg
actgatccctgcgtcatctatcctggcccagaattccagggtgtgtcttaccctggacct
gatggtcttcccggatccagaggattgcccggtgacagaggatacaaaggcttcagaggt
gaccctggggactgtaactgcctaggaggggagttcaaggggcaacctggtttaccagga
cccgctggacctgttgggagggatggtttcaatggaccaaagggaggtgctggtgaccgc
ggcacacccgggtttaatggcattccaggacctactggtttacctggagtagcaggagtc
tttggtcgtaaagggcagaagggagaaccttattacccacctttagcggcgaaaggagag
cgtggagcacctggactgatgggacctactggcgaaactggaaaacctggcagagatggg
tttccaggctcccctggagcccctggactcccaggcgacgctggcgtcggcacaggcgga
gagaaaggtttcccaggattctcggggcctaagggacgtcaaggcagtcctggcgagccc
ggcgttggctacgtcggaacgcctggctttgccggagagcctggagatcccggtatacct
gggtttccagggccaccaggtttacctggaatgaaaggtgaaaacatctgtggaggggtt
tatgacgtccgagagggaacgggccagctgctcccatgcatcatacctggtgaagaagga
aaccccgggccctccggtttacctggtcagccaggccctaaaggtcggtcaggtttccca
ggagaacctggccggcctggatttgacggagccaaaggagagagaggagaacccggtttt
ggaggcctacctggaccacaaggcttcactggacccaggggggaccctggacttccaggc
atcccaggacagagttttgatggacccaggggtaaagacggtgttccaggttttcctggc
gtgaaaggccagcctggagaggttctgggcgcgacgcctggactgccaggatctgctggt
ttaccaggagtctttggggacaagggccagtctggaacacctggaacacctgggatacct
ggtgccgatggacgttctggtgttcctggacttaagggagagagaggagttaacggcctt
cctggttttcccgggcctcctggattttcaggttcgccaactgatgctgttcctggcaag
cgtggagtttctggtgagagtggacggaggggaccaccaggttttcctggtagaaaggga
gatagaggagatcctggcttcccaggacctgctggtatgaagggaaccccaggactgccg
gggtttcctggattaccagggccaagtggaccccctggacctccaggattaggaaacaga
gagggatttccgggatcacaaggaagaaagggtgaaagaggttacccgggactggtgggc
tttactggaccacctgggcccactggtgctccagggtttcctggggataaaggtaaacct
ggtgcttttggaagagatgggcgccctggtgcacctggaccatctggaatgaaaggtgag
agaggtccctttggtcctcctggcctgccgacttcttataccccaccagggcttcttcat
aaaggagaacctggatttcctggaggcaccggcctttctggctttactggacctagaggt
gacaagggtctgtcaggtgtgcctggtagtccgggtctgtctggtctttccggtttgcct
gggcagattaagggacagaagggagagcctgggttccccgggcagcgaggaggtccaggt
taccccggaccgaagggagaagatggaatcatgggattccctggcatgcctggaccaagg
ggtgatgaaggtgcacctggttttcctgggactcctggagaatctggtcgacctggtttc
aaaggtcagcctggagaatcttatggcattattggaggtccaggaagtaaaggtctgcca
ggagatccaggcttctcaggtggtcgtgggtttgatggggcccctggtgacaacggcttt
ccaggaagtccaggttttcctggatcaaagggagctcatggggaaacagggcgccccgga
tttatgggctctcctgggttccctggggcgaagggtcagcctggctttcctggaatcaga
ggactggatgggcctcttggtctgcctggaggccttggaggtcctggagccaaaggtctg
cctggatcccctggtttggatggacttaatgggcttgcagggcagaaaggttcccctgga
accccaggcgttgctaccaacagccgccctggtctccctggtgttccaggggtgaaagga
gaacgaggcttgtctttcccaggtcctccaggcttctctggccagaagggaacaagagga
gaacaaggttttcctgggcttccagggatccctggtctgcccgggctccctggtgagagt
gggaggtccaatattcctggacctatgggagaccctggctttgtcggacaggatggagat
tatggtcttccaggtcttccaggacctcgaggaccaccaggtccaggaacagttcaaggg
gacagaggtgactctgggcttccaggctttcctggcaatcctggcagcaaaggagaacca
gggcttcccgcaggccctgggttacccggcagctatggtgttaaaggagtacgaggagac
gctggtttcagtggagagcctggctttaagggttacccaggtgactctggtgcctatgga
tacaagggagccaagggagctcaggggagtcctggtcctaagggtcctcctggaacattt
atatcaataccagggtcaccgcaattgctcattgaaggagagccagggattcccggtgaa
agtggcctcttcggtggtcctggacaacctggtcagcctggactccctggtcgccaaggt
cccaaaggccgtagtggttctgtgggtaaactggggcgatctggagctcctggcttccct
ggacctgttggtgatcctggaccaaccggtctccctggatcaactggagaacaaggtcgt
cctggaggagtcggtcgtcccgggcctccgggcagcgttggccggagctccagcatcggc
tacactcttgtgaagcacagccagagctcccaggttcctatgtgtccccagggtatggcc
aagctgtgggatggatacagtctgctctacgtggagggacaggagaaggctcacaaccag
gaccttggtcagccagggtcgtgcctccccaggttcagcaccatccccttcctctactgc
tctcccaacgaggtgtgctactacgccagccgcaacgacaagtcctactggctctccacc
accgcacccatccccatgatgcctgtggccagggagcagatacgaccctatatcagcaga
tgttcagtgtgtgaggctccatctcaggccgtggcggtccacagccaggacacgtccata
cccacctgcccgcctggctggaggagtctctggattggctactccttccttatgcacaca
gcagcaggtgctgagggcggagggcagtcgctggtgtcgcccggctcctgtctggaggat
ttccgtgccacgccgttcatcgaatgcaacgggggcaaaggcacgtgccactactttgcc
aacaaatacagcttctggctcaccaccgtggaccccaggcaggagtttgtcggctctccg
gcgcaggagaccctgaagggaggccagcagttctccaaagtcagccgctgccaagtctgc
agcaagctgttgtag
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