Betta splendens (Siamese fighting fish): 114851383
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Entry
114851383 CDS
T08231
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04510
Focal adhesion
bspl04512
ECM-receptor interaction
bspl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114851383 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114851383 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114851383 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bspl04147
]
114851383 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
bspl00536
]
114851383 (col4a5)
Exosome [BR:
bspl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114851383 (col4a5)
Glycosaminoglycan binding proteins [BR:
bspl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114851383 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114851383
NCBI-ProteinID:
XP_028999012
UniProt:
A0A6P7LYL0
LinkDB
All DBs
Position
2:18972334..19002504
Genome browser
AA seq
1677 aa
AA seq
DB search
MPKDARSLAAPLLVLALCAAVQRSESAACHGCVGSKCDCSGVKGAKGERGFPGLTGPPGV
PGFPGPEGPIGARGEKGSDGPQGLSGPKGIRGPPGLPGFSGTPGLPGLPGQDGPPGPRGV
PGCNGTKGEKGYPGSPGINGLQGIPGPPGLPGQKGDPGDVISSGIFGPKGAVGLPGLPGL
PGTPGAPGLQGPLGPPGPRGYEGRPGAPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPP
GQVGEQKKPPESEIQRGDKGDPGSPGLPGDPGFPGPPGPSGGQKGEKGEPGEFGKRGKPG
KDGDPGPVGFPGSKGEQGFPGPPGRDGEQGTKGDRGFPGPPGIVIGQTGGQVGPKGDPGL
PGSPGLKGERGPQGLTGPPGAPGLPAIGGSGPPGNPGLPGERGQKGDTGPPGFSLPGPPG
RPGSSGLQGPPGPPGPPGISSGGQTCIPGNPGQPGVPGDRGFQGETGQKGEKGETCVNCF
GETSSIPGPQGPQGPPGLPGRPGSPGIKGDRGFQGIRGDNGLPGAPGPQGAPGPVGEKGD
PGDAITVNGIKGEKGDTGFPGVPGLPGLDGRPGRNGQPGPPGPKGISGSLTVKGDRGPPG
EPGVQGIPGDRGPPGSPGFGPQGPTGAKGVQGVSGRPGAPGVPGAKGEPGLTIAEKGLPG
PRGQDGEPGLPGAPGNPGQPGQPGFAGLRGEKGEPGLPGIGLPGPPGVKGIQGIPGQPGA
PGGPGRPGVDGRPGQPGSPGSKGEPGFGLPGPPGLPGPSGAKGYPGAKGDPGFPGSPGQP
GRSGYDGPTGLKGEPGTPGIPGARGPPGSSTTGTVGPPGPPGPPGPMGETGFPGQNGAKG
DPGPPGLDIPGLPGDRGISGLPGSPGPIGPPGPPGRPGQDGLPGLAGQKGDMGAMGAPGP
AGGPGRPGAPGGPGFKGEPGFQGRDGELGPPGAKGERGDQGLPGPPGIVQSFSSKGAKGD
PGPPGATGLPGQKGISGLNGDPGLPGSNGRPGLPGPPGPKGDPGIPGGPGALGPQGQKGA
MGEMGIPGPSGQKGVPGQPGRPGSQGQPGTPGSPGFKGEPGSAGAGPPGPPGQKGEPGQP
GFPGSPGLKGTPGSPGLPGLSGAQGSKGEPGLPGFQGPPGIPGPKGLDGEPGATGLTGAP
GRPGEPGRPGPSGFPGDKGQAGRDGIPGPSGIKGEPGLPGYGIPGPPGLPGSPGSKGDPG
LPGPSGSPGYPGPKGDAGSPGSPGLPGNSGPPGPPGPAVQGPKGFQGPPGPPGRAGPPGP
EGPRGPAGSGGVKGEKGIPGAPGQPGLSGQKGETGFPGIQGSPGLPGPPGAKGDLGPPGV
SGFPGMKGDPGSPGNPGRPGDPGDRGVTGPPGDPGVVSAPIMVKGERGPPGPQGLPGPRG
PTGPPGREGLPGQPGNPGDPGTDGPPGFNGPPGQKGELGPSGQPGQRGYPGPPGSDGPQG
IPGPPGSVSAAHGFLITRHSQTGEVPFCPDGTNVIYDGYSLLYVQGNERAHGQDLGTAGS
CLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIKPFISRCAVCE
APAMVIAIHSQTIQIPACPANWENLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSAP
FIECHGRGTCNYYGNSYSFWLATIEPNEMFSKPHSETLKAGNLRTRVSRCVVCMKRT
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaagacgcgaggagcctcgcggcgccgttgctcgtcctcgccctgtgcgccgcg
gtgcagcgatccgagtctgcggcctgccatggatgtgtgggaagcaaatgtgactgcagt
ggagtaaagggggccaagggcgagcggggcttcccagggctcacaggaccaccgggggtc
cctggtttcccaggccccgaagggccaatcggcgccagaggagagaagggtagtgacggg
ccacaggggctgtctggtccaaaaggaattagagggcctcctggattgccaggattttca
ggaacaccaggacttccaggtctaccagggcaggacggacccccaggcccaagaggagta
ccaggctgcaacggcacaaagggtgaaaagggttacccaggaagtccaggaatcaatggg
ctgcaaggaataccgggtccacctggtctgccgggacaaaagggagatcctggcgatgtg
atctccagtggtatttttggaccgaaaggagcagtaggattgcctggactgccagggctt
cctggcactcctggtgcccccggattgcaaggtccacttggcccccctggacccagaggt
tatgagggtcgcccgggtgctcctggtcttcctggacctaaaggaaacatgggtttgaac
ttccagggacccaaaggagaaaagggtgaacagggtttgcaaggaccccctggtcctccc
ggacaggttggggaacagaagaaaccacctgagtctgagattcagagaggagacaagggg
gacccaggatcccctggcctcccaggtgatcccggctttccaggacctccaggaccctcc
ggtggccagaaaggagaaaagggtgaaccaggagagtttggaaaacgaggtaaaccaggc
aaagatggtgaccctggccccgtaggctttcccggaagcaaaggagagcaaggcttccct
ggtcctccaggcagggatggagagcaaggtacaaagggagatcgcggattcccaggccca
ccaggaattgtgatcggtcagaccggaggtcaggttggtcctaaaggtgatcctgggcta
cctggttcaccaggactaaaaggagaaagaggaccacaaggcctaacaggacctcctggg
gcaccaggacttcctgccattggtggaagtggtccacctggaaatccaggtttgcctgga
gagagaggacaaaagggagacacaggtcctccagggttttccttgccagggcccccagga
cgtccaggttcttctggtttacagggtccaccagggcctcctggacctcctggaatttcc
agtggaggacaaacttgcatccctgggaatcctggacagcctggtgttccaggagatagg
ggtttccaaggagaaacaggccagaaaggtgaaaagggggagacctgtgtgaactgcttt
ggtgaaaccagttcaatccctggaccccaaggacctcaaggaccaccaggactccctggt
cgtcctggctctcctggtatcaaaggtgacagaggatttcaaggaatccgtggtgacaat
ggcctccctggtgcccctggtccccaaggtgctccaggaccggttggagaaaaaggagac
ccaggtgatgccattacagtcaacggtataaagggagaaaagggtgacactggctttcct
ggagtacctggtcttcctggtttggatggcagacccggccgtaatggacagcctggacca
cctgggccaaaaggaatttctggctctctaacggtgaaaggagatcgaggaccccctggt
gagcctggtgttcaaggtattccaggagacaggggtccacctggttcccctggctttgga
ccacaggggcctacaggagcaaagggtgtccagggtgtatcaggaagacctggagctcct
ggtgtacctggtgctaaaggtgaaccaggcctgacaatagcagaaaaaggcttaccagga
cctagaggacaggatggcgaacctggactgcctggtgcaccaggtaacccaggtcaaccc
ggacagcctggtttcgctggtttacgaggagaaaagggtgaacctggactcccaggcatt
ggactcccaggaccaccaggagtaaaaggaatccaaggtatccctggtcagccaggagct
cctggaggaccaggaagaccaggtgtggatggacgccctgggcagcctggaagtcctgga
tccaagggtgagcctggctttggacttcctggtcctcctggcttaccaggaccatctgga
gctaaaggttacccaggagctaagggagatcctggtttccctggtagtcctggtcagcca
ggacgttctggatatgatggacctactgggctcaaaggtgaacctggcacacctggtata
cctggagcccgtggcccacctggatcctctaccactggtactgtaggacccccaggcccc
cctggacctccgggcccaatgggagaaacaggattccctggacaaaatggagcgaaagga
gacccaggcccaccaggacttgacatcccaggtttgccaggagacagaggaatttctggt
ctaccgggttcccccgggccaattggccctccaggacctcctggaagacctggacaagat
gggttgcctggattggcaggtcagaaaggagacatgggtgccatgggagctccaggacct
gctggaggcccaggacgcccaggagcacctggtggtcctggatttaagggtgaacctgga
ttccaaggtagagatggtgaacttggtcctcctggcgctaaaggagagaggggggatcaa
ggtcttccagggcctcctggaattgtgcagtcattttcttcaaaaggagcaaaaggagat
ccaggaccaccaggtgcaacaggacttccaggccagaaaggtatttctggtctcaatggt
gatcctggactaccgggatcgaatggacgccctggactccctggcccaccaggtcctaag
ggcgatcctggaatccctggaggcccaggagcacttggccctcaaggacaaaagggtgca
atgggagaaatgggaattccaggaccatcagggcagaaaggtgtaccaggtcagccagga
cgaccaggatcccaaggtcaacctggaacacctggatcccctggattcaaaggtgaacca
ggttctgctggtgctgggccaccaggaccacctggacagaagggcgagccaggacaacct
ggtttcccaggaagtccaggactgaaaggaactccaggatcacctgggctgccaggttta
tcaggagcacaaggttccaaaggcgaacctggccttccaggattccaaggtcctcctggc
atcccgggtcctaaaggtcttgatggggaacctggtgccactggtctcactggagctcct
ggccgaccaggagagcctggtcgaccaggaccatcagggtttccaggagataagggtcaa
gcaggtcgtgatggtatcccaggaccatctggaatcaaaggggagccaggacttcctggt
tatggtattcccggtcctcctgggctgccaggttcaccaggttctaagggagatcccggt
cttcctggtccatccggcagtcctggttaccctggacctaaaggagatgctggctcccct
ggctcccctggtcttccaggcaacagcggcccacccggaccaccaggaccagctgtacag
ggccctaaaggattccaaggaccacctggaccacctggaagagcaggtccacctggccca
gagggtcctcgtggccctgcaggaagtggtggtgtgaagggagagaagggtattcctggt
gcccctggccaaccaggcctctctggacagaaaggagaaactggttttccaggaattcaa
ggttctcctggacttcctggtccccctggtgcaaagggggacttaggtccgcctggtgtt
tctggattccctggcatgaagggagacccgggctcccctggtaacccaggtcgtcctggg
gaccctggggaccgtggagtgactggccctcctggtgacccaggtgtagtttcagctccc
atcatggtgaagggagagcgaggacctcctggtccgcagggtctaccgggtcctcggggt
ccaactggtcctcctggacgtgaaggcctcccaggccaacctggtaaccctggagatcct
ggtacagatggtcctccaggcttcaatgggcctccaggacaaaagggagaacttgggcct
tccggtcaacctggtcagcgtggctatcctggtccacctggttcagatggtccacagggt
attccaggtcctcctggatcagtctctgccgctcatggtttcctcatcacccgacacagt
cagactggtgaagtgcccttttgccctgacggaactaacgtcatctacgacgggtactcc
ctgctctatgtgcagggcaacgagagggcacatggacaggaccttggtacggccggcagc
tgcctacgcaggttcagcaccatgcccttcatgttctgcaacattaacaatgtctgcaac
ttcgcctctcgcaatgactactcctactggctgtccactcctgagcccatgcctatgtcc
atggctcccatcaccggagagagcatcaagccattcatcagccggtgtgctgtgtgtgaa
gctccagccatggttattgcaatccacagtcagaccatccagatacctgcttgtcctgct
aattgggaaaatctgtggataggctactccttcatgatgcacactagcgcaggtgcagag
ggttctggtcaggcgctggcctcccctggatcctgcctggaggagttccgcagcgctccc
ttcatagagtgccacggcagggggacgtgcaactactatggcaactcatacagcttctgg
ctggccaccatagaacccaatgagatgttcagtaagccccattctgagaccttgaaagct
ggcaacctgcggacgcgcgtcagccgctgtgtggtctgcatgaagaggacgtaa
DBGET
integrated database retrieval system
