Betta splendens (Siamese fighting fish): 114852489
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Entry
114852489 CDS
T08231
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03022
Basal transcription factors
bspl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114852489 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
114852489 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bspl03021
]
114852489 (ercc3)
03400 DNA repair and recombination proteins [BR:
bspl03400
]
114852489 (ercc3)
Enzymes [BR:
bspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
114852489 (ercc3)
Transcription machinery [BR:
bspl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114852489 (ercc3)
DNA repair and recombination proteins [BR:
bspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114852489 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
114852489
NCBI-ProteinID:
XP_029000750
UniProt:
A0A6P7M2H2
LinkDB
All DBs
Position
3:complement(18805378..18814722)
Genome browser
AA seq
783 aa
AA seq
DB search
MGKKDKGDREKKSKKRFFEEEEDEEEVVGSESQEAVPAAAGKQVDESSTKLDEYGAKDYR
VQMQLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHVHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQHLLQDNVIRECRLRTADGADTELITEVIHSKSAISKSVQDKGGASTSQQPSDGQTS
SQPVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRSQEWGLIILDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSNREEQQLLLQKVLAAS
DLDAEEEVVAGELGTRPQFSRRTGTMSSMSGADDTVYMEYQSRSSKALLSSKSVHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaggataaaggcgatcgggagaaaaagtccaaaaagcgtttctttgaggaa
gaagaagatgaggaagaagtggtgggcagcgaatctcaggaagcagtacccgctgcagcc
gggaagcaagtggatgaatccagtaccaaactggatgagtatggagccaaagactaccgt
gttcagatgcagttaaagaacgatcactcgtcacggcctctctgggtggccccagatgga
cacatctttcttgaagccttctcaccagtgtataagtatgcccaggacttcttggtggca
attgcagaaccggtgtgcagacccaaccatgtccatgagtacaaactgacagcctattct
ctgtatgcggctgtcagtgtagggctgcaaacctcggatattgtggagtacctgcaaaaa
ctgagcaaaacatctgtacctgatggaattgtgcagttcattaagctatgcacagtgagc
tatggcaaggttaaactggtgctcaagcacaataggtattttgttgagagtgccttccct
gatgtgattcagcacctcctacaggataatgtgattcgtgaatgtcgccttcgtactgca
gatggagcagacactgaacttattactgaagtcattcacagcaagtcagcgatatccaaa
tcagttcaggacaagggtggtgcttccacctcacagcagccaagtgatggtcaaacatca
tcccaaccggtccctgaggacattttcagctactatgagcagatggataaggaagaggag
gaggaggaggagactcagacggtgtcatttgagattcgccaggaaatgattgaagaactg
cagaagcgttgtattcagttggagtaccccctcctggcagagtatgattttcgcaatgat
acagttaacccagacatcaacatcgacctgaagcccactgctgtgctgcgaccctatcag
gaaaagagtctgcgcaagatgtttggaaatggacgtgctcgctcaggggtcattgtgctg
ccctgtggggcaggaaaatctctggtgggtgtaacggctgcatgcacagtacgtaaacgc
tgcctggtgttgggcaactcctctgtgtctgtggagcagtggaaggcccagtttaagatg
tggtccaccattgatgactcccagatctgccgcttcacctctgatgccaaggacaagccc
atcggctgttcagtggccatcagcacctattctatgctgggtcacaccaccaagcgctcc
tgggaggccgagagggtcatggagtggatgcggagccaggagtggggacttattatccta
gatgaggtccatactattcctgccaggatgtttcgtcgtgttctgaccattgttcaggct
cattgcaagctcgggcttactgccactctggtcagggaagatgacaagattgtcgatctc
aacttcctaattggaccaaagttgtatgaggccaactggatggaattgcagaacaatggc
tacattgccaaagtccagtgtgcagaggtgtggtgccccatgtctccagagttttacaga
gaatatgtggccattaagacaaagaagcgcatcctgctttatacgatgaaccccaataag
tttcgcgcttgccagtttctcattcggttccacgagaggcgcaatgacaagatcattgtg
ttcgctgacaatgtgtttgccttgaaggaatatgctattcgtctcaacaagccttacatc
tatggaccaacctctcaaggagaacgtatgcagattttacaaaacttcaaacacaacccc
aagatcaacaccattttcatctccaaggttggagacacttcgtttgacttgccagaagca
aacgtcttaatccagatctcttctcatggtggatcacgtcggcaagaggcccagaggctt
ggcagagtcctacgagccaagaaaggaatggtagcagaagagtacaatgcgtatttctat
tccttggtatctcaggacacccaggagatggcttactccactaagagacagaggttcctg
gtagaccagggatacagctttaaggtgatcaccaagttggcaggtatggaggaagaggac
ttgatgttttccaacagagaagagcaacagctgttgctacagaaggtactggctgcttca
gaccttgatgctgaggaagaagtggttgcaggggagctgggcacacgaccacagttctca
aggcgaacaggcaccatgagctccatgtcgggagcagatgacactgtctacatggaatac
caaagtcgaagtagtaaagctctactatcaagcaagagtgttcatccactgttcaagcgc
ttcaggaagtga
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