Betta splendens (Siamese fighting fish): 114852634
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Entry
114852634 CDS
T08231
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
bspl
Betta splendens (Siamese fighting fish)
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bspl03009
]
114852634 (pdcd11)
Ribosome biogenesis [BR:
bspl03009
]
Eukaryotic type
90S particles
Other 90S particles
114852634 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
OB_RRP5_4th
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_16
TPR_17
TPR_CcmH_CycH
ARM_TT21_5th
ARM_TT21
DUF2110
TPR_15
Wzy_C_2
PPR
TPR_12
Motif
Other DBs
NCBI-GeneID:
114852634
NCBI-ProteinID:
XP_029001000
UniProt:
A0A6P7M340
LinkDB
All DBs
Position
1:complement(15358633..15369002)
Genome browser
AA seq
1812 aa
AA seq
DB search
METLEEDFPRGGTAKKANENKIVVQHTGVDNLFQQAPAETPKRKGAVKDDGSKAKKQKTS
NEVDAGLTLNVASKHVEILHLKNVKQGMLLLGCVKEVTDFEVTVGLPCGLQGFLSIQNIS
DSYTKLLTEQLDSDTTEICSMPHLFYPGMVIKCVVARLDISRGGSSSIQLSVNPKLLNKA
LTSGSLKPGMVLSGCVESVEDHGYLVDIGIGGSKAFLPEKAARDQQKSSKELEVGQYVTV
QVEEIKNDGRVVRLSISPLTIVQACAESKQGWNLANLQPGLLVKATIKKVTKDGLILDFL
SSFSGQVDFLHMEPEMEYREGGQIRACVLYVEQSTRLVGLSLRKYLIQPEATVDPAPAGG
DRIGEVVKDCKIITRHQMSGAILELPDKTLAFVHKRHMKEGSEKASSAEHTCRILNFSPM
DQIHFVSLRRSVIEKPLFRYHDLQAGQVVEGTVSVLMKNAMVVHLTDHIKGLVPRIHLSD
IVLQNPEKKYTEGMKIKCRVLSVDVEKRKLFLTRKKAIIESTLPLFLSYADTRPGRVSHG
FIVCIKDFGCIVRFYNNVKGLVPLNELSSEPIVQPDEVFYVGQVVKAKVLHCDPANSKLL
LSLKSAVEGETVEVASPHLEGERLQARVLKKSPNGLEVAVLPDVIRAILPTMHLSDHMSN
CSLLWESLQKGDVVSDLAFFNCKNNITLTKKPTVTWTLVDGDVAKEFSEIKVGIQLIGWI
KSIMSYGVFVEFPYGLVGLAPKSAMADRFISDTTTVFQVGQTVLAKVTNLDEEKRRFLVT
LKISEVTAPEGDIQSRLISGLQERRAVADALAQRGNSDLQQQLSALCVGQKLKLTVDTAN
DDGAVFKSDDMTGATIVAGKHHVTGANLTSGQKVTAVVLHVDILSTCVHVSVLPQLVIKK
KSLAEGLKYTATVQYVDADFAVISLENTAQLTVVQTRWHLNEVFLTESEKLKLGMCFPVE
VVEASCEELKGLPLVLQEQSTSRPLRTPLEKNVPRKSCYFGKVVKAKVRTVKPTCIYLTL
EDGSKGSVHVSEVMDPKDVCLGSFPTSLVKVGDTVTARVIGAREDSSSKFLPFSHPRFKY
TTPELTLVPSKLDRSVEFKVKTGKEVVQSYEVGQELTCFVSKYDVAEKSLEVTSHHSVTG
TVELLATITDPKNAKHPEKLYKLGEAVCAKVVNVRNKPRRLALSLTGVYKLEQGMVTLGI
VTNIYPRLGLLVKLPFDNVGTVHITDVDDAYKSSILDGYSTDQVIRCLLLRYENDKWQLS
LRPSRLNPQQAKSVKDPEVSSLDALKPGQLIRGYLKSVGAQAVLIRLGRGITGRASFKKT
THYQVDSLKVLFKQLESKTVFTTKILSIDNEVVNISLLPEDTMKPDVIPESLGLPLRKMM
EEEEEEEKEEEEKHDSEEEEEEEEKHVSKKKKRALAESDKKQEESRVPKKKKINQAKTND
SDSGVEVYFKEDVQKPKPKAAKQTSSTGPSRLQISAGFSWDIGLSSLKPAFTAQEDDSSD
GEDQEGSSKPQKKTRHELQQEKKAAEKVLQQRETELMDPNLRPQEVADFERLLLASPNSS
LLWLQYMAHHLQATQIEQARSVAERALKTISFREDQEKLNVWVALLNLENMYGTEESLKK
VFERALQFCEPMPVYQQLADIYAKCDKIKEAEALYKTMVKRFRENKAVWLNYGTFLLQRG
QSEEANAVLQRALKSLPSKESVDVITKFAQLEFRHGDAERGRVMFDKVLTSYPKRTDLWS
VFIDLTVKHGSQKEIRALFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSMEAVKEKAM
EYVEAKGTKAAK
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgttggaggaggacttccctcgaggagggacagcaaagaaggccaatgagaat
aaaatagtggttcaacatacaggagtggacaaccttttccagcaggcgccagcagaaact
ccaaaaagaaaaggggctgttaaagatgatgggagtaaagcaaagaagcagaagaccagc
aatgaagtggatgctggtctgacactgaatgtggcatctaagcatgtggagattctacat
ctcaagaatgtgaaacagggtatgctgttgctgggttgtgtgaaggaggtgaccgatttt
gaggtgacggtcggtctgccttgtggcctgcaaggcttcctcagcatccagaacatcagt
gactcgtacacaaagctgctgactgaacagctagattctgacacaacggagatctgctct
atgcctcacttattctaccctggcatggtaataaagtgtgtggttgctaggttggacata
tctaggggaggctcttcgagcatccagctgtcagtcaatccaaagctactcaacaaggcg
ctgacctcaggctctctgaaaccaggaatggttttaagtggatgtgtggagagtgtagag
gaccatggctacttggtcgatatcggcatcggtgggtccaaagcctttctgccggagaaa
gcagcaagagaccaacagaaaagctctaaagaattggaagtgggtcagtatgtgaccgtt
caagtggaagagataaaaaatgatggacgggtggttcggctgtctatcagccccctcacc
atcgtccaggcctgtgctgaatccaaacagggctggaaccttgctaacctccagcctggt
ctcctggtgaaagctacgatcaagaaggtgaccaaagacggcctcatcctggactttctg
tcctctttcagtgggcaggtggacttccttcacatggaaccagaaatggagtaccgcgag
ggtggccagatacgtgcctgtgtgctgtacgtggaacagtccacgcgcctggtgggtctg
agtctgcgcaagtacctcattcagcctgaggccacagttgatccagccccagctggtggc
gaccgcattggtgaggtggtgaaggactgcaagataattaccaggcaccaaatgtctggg
gccatattggaacttcctgacaaaactttagcctttgtacataaaagacacatgaaggag
gggagcgagaaagcaagcagcgccgagcacacctgcaggatcctgaacttcagccccatg
gatcaaattcattttgtcagtctgcgcaggagcgtgatcgagaaacctttgtttagatat
cacgaccttcaggctggtcaggttgtagaggggactgtgtctgtcctaatgaaaaatgcg
atggtggtgcatctgacggaccacattaaaggactggtgcctcgcatccacctgtctgac
attgtgcttcagaaccctgagaaaaaatacacagagggcatgaagatcaaatgccgggtt
ttgtcggtagatgtggagaagaggaagctcttcctgaccagaaagaaggccattattgag
agcactctgccgttgttcctgagctacgccgacactcgtccaggccgcgtctcccacggc
ttcatcgtctgcattaaagactttggctgcatcgttcgtttctataacaatgtaaagggc
ctggtgcctctcaatgaactcagctctgagcctatcgtacagcctgacgaggtgttctat
gttgggcaggttgtaaaggctaaagttcttcactgtgatccagccaattcaaagttgttg
ctgtcattaaagtctgcagtggagggagaaacagtggaagttgcttcaccccacttggag
ggcgagaggctacaggccagggtgctaaagaagtcgcccaacggcctggaggtggccgta
cttcctgatgtgatacgagccattctacccacaatgcacctctctgaccacatgtccaat
tgctctttgttatgggagagcctgcagaagggagacgtcgtctcagacctcgccttcttt
aactgtaaaaacaatattactctcacaaagaaaccgaccgtgacatggacactggtggat
ggcgacgttgccaaggaattctccgaaatcaaggttgggatccagctcattggctggatc
aagagcatcatgtcctatggtgtttttgttgagttcccatacggccttgtcggccttgct
cctaagtcggccatggccgacaggtttatcagcgacacgacaacggtcttccaggtcggt
cagactgttctagcaaaagtgaccaacctggatgaggagaagcggcgtttcctggtcaca
ctgaagatctctgaggtcacggcccccgaaggagacatccagtccagactcatcagtggg
ctgcaggagaggagagctgtggccgacgcgttggctcagagaggaaacagtgacctgcag
cagcagctgtccgctctgtgtgttggtcagaagctaaagctcactgtggacactgcgaat
gacgacggtgcagtgtttaagtctgacgatatgactggcgctaccatagtggccggcaag
catcacgtcacaggtgccaacttgacctcaggacagaaagttacggctgtcgtccttcac
gtcgacatcctctctacgtgtgtccatgtttctgtccttccccagcttgtgattaagaag
aaatctttggctgaaggattaaaatacacggcgacggtgcagtacgtcgacgcagacttc
gctgtcatctccctggaaaacacggcgcagctcactgttgtccagactaggtggcacctg
aatgaagtgttcttgaccgagtcggagaagctgaaactggggatgtgttttccagtggag
gttgtagaagcaagctgtgaggagctaaaagggctccccctagtgttgcaggagcagagc
acatcgaggccactacgcacccctctagagaagaatgtgccccggaagagctgctacttt
ggtaaagtcgtgaaggcaaaggtgcggacagtgaagcccacctgcatttacctcacactg
gaagacggaagcaaaggcagcgtgcacgtgtccgaggtgatggatcccaaagacgtgtgt
ctgggatctttccccacgtcgttggtgaaagtgggcgacacggtcaccgccagagtgatt
ggagcacgagaagactccagtagcaaatttctgccgttttctcatcccagatttaaatac
accactcctgagctcacacttgtacccagcaaactagacagaagtgtggaattcaaggtc
aaaacaggaaaagaagtggtacaaagttatgaggtcggacaagaacttacatgctttgtt
tcaaagtacgatgttgctgagaagtctttggaagtcaccagtcaccactctgttactggg
accgtggagctcctggccaccatcacggatcctaaaaatgccaagcacccagagaagttg
tacaagctgggcgaagctgtctgtgctaaagtggtgaacgtgcgcaacaaaccccgccgc
ttagctctgtctctcacaggtgtctataaactggagcaaggcatggtgactttgggcata
gtgactaatatttacccacggcttggcctcttggtcaaacttccctttgacaacgtgggg
actgttcatattacggacgtggacgatgcctataagagtagtatcttggatggatacagc
acagatcaggtgatcaggtgtttacttctgaggtatgaaaacgacaagtggcagttgtct
ctgcgtccatcaagactgaaccctcagcaggccaagtcagtgaaggacccagaggtttca
tctctggatgcgctgaagccaggccagctgatcagaggctatctgaagtctgtgggagcg
caggcagtcttaatcaggttgggtcggggcataactggaagagcctctttcaagaagacc
acccattaccaggttgacagcctgaaggtcctctttaagcagctcgagtccaagactgtc
ttcaccaccaagattctcagtattgacaacgaggtcgtcaacatttctctgctccctgag
gacaccatgaagccagacgtcattccagaatcgctcggtctaccgcttcgcaagatgatg
gaggaggaggaggaggaggaaaaggaggaggaggagaaacatgattccgaggaggaggag
gaggaggaggagaaacacgtttccaagaaaaagaaacgtgcgctggctgagagcgacaag
aaacaagaagagtcacgggtcccaaaaaagaagaaaataaaccaagcaaaaactaatgac
agtgacagcggtgtggaggtgtactttaaagaagatgtacagaaacccaaacctaaggct
gcaaagcagaccagctcaacaggcccctccaggcttcagatatcagcaggcttctcctgg
gacataggactgagctccctgaagcccgcgtttactgctcaggaggacgactccagcgat
ggagaggaccaagagggcagcagtaagccccagaagaagacccgtcacgagctgcagcag
gagaaaaaggctgcggagaaggtcctgcagcagcgggagactgagctcatggacccgaac
ctgcgcccccaggaagtggcggactttgagcggctgctcctggcctcacccaacagctct
ctgctttggcttcagtacatggcccaccacctgcaggccacacagatcgagcaggcgcgc
tcggtggccgagagggcgctgaaaaccatttcattcagggaggaccaggagaagctgaac
gtgtgggtggccctgctgaacctggagaacatgtacggcacagaggagagcctgaagaag
gtgtttgagcgcgcgctgcagttctgtgaacccatgcccgtctaccagcagctggcagac
atctacgccaagtgcgacaagatcaaggaagcggaggccttgtataagacgatggtgaag
cgcttccgtgagaataaagcggtgtggctgaactacgggacgttcctgctgcagcggggt
cagagcgaggaggccaacgctgtcctgcagagggcgctgaagagtctgccctctaaagaa
agtgtggatgtcatcaccaagttcgcacagctggagttccgccacggcgacgcagagcgg
ggtcgcgtcatgttcgacaaagtcctgacgagctacccgaaacgcacagacctctggtcc
gtcttcatcgacctcacggtcaagcacgggtcccaaaaggaaatccgggcactcttcgat
cgagtgattcatctgagcgtgtcggtgaagaagatcaagttcttcttcaagcgctacttg
gagtacgagaagaagcacggcacgcctcagagcatggaggcggtcaaagaaaaggcaatg
gagtatgtggaagctaaaggcaccaaggccgccaaataa
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